RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 IGFBPL1Q8WX77 278 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 ATG4AQ8WYN0 398 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 WDYHV1Q96HA8 205 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 OR4K3Q96R72 315 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 C19orf24Q9BVV8 132 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 RAB6BQ9NRW1 208 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 QPCTLQ9NXS2 382 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 SVEP1Q4LDE5 3571 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 TLX2O43763 284 aaPredicted RBP10.75□□□□□ -0.69
CLK3-222ENST00000568232 CD5LO43866 347 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 IFNB1P01574 187 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 PTMAP06454 111 aaKnown RBP10.75□□□□□ -0.69
CLK3-222ENST00000568232 RPL22P35268 128 aaKnown RBP10.75□□□□□ -0.69
CLK3-222ENST00000568232 CPOXP36551 454 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 FDFT1P37268 417 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 MC3RP41968 323 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 ATP5J2P56134 94 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 WIPI1Q5MNZ9 446 aaPredicted RBP10.75□□□□□ -0.69
CLK3-222ENST00000568232 LYPD8Q6UX82 237 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 PLEKHM3Q6ZWE6 761 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 STRA8Q7Z7C7 330 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 MORN4Q8NDC4 146 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 SLC2A12Q8TD20 617 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 DAZLQ92904 295 aaKnown RBP10.75□□□□□ -0.69
CLK3-222ENST00000568232 INTS12Q96CB8 462 aaKnown RBP10.75□□□□□ -0.69
CLK3-222ENST00000568232 SNF8Q96H20 258 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 TCF12Q99081 682 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 GPR21Q99679 349 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 UGT2B28Q9BY64 529 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 ALOXE3Q9BYJ1 711 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 CALHM2Q9HA72 323 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 DHRS7Q9Y394 339 aa10.75□□□□□ -0.69
CLK3-222ENST00000568232 GOLGA6L9A6NEM1 432 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 URADA6NGE7 173 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 A8MXE2 369 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 C17orf105B2RV13 164 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 PFDN6O15212 129 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 ETHE1O95571 254 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 C1QAP02745 245 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 ENO3P13929 434 aaPredicted RBP10.74□□□□□ -0.69
CLK3-222ENST00000568232 PAX1P15863 534 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 TNNI3P19429 210 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 SAT1P21673 171 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 CRYGSP22914 178 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 LOXP28300 417 aaPredicted RBP10.74□□□□□ -0.69
CLK3-222ENST00000568232 CETN2P41208 172 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 KLF1Q13351 362 aaPredicted RBP10.74□□□□□ -0.69
CLK3-222ENST00000568232 VEZF1Q14119 521 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 SF3B4Q15427 424 aaKnown RBP eCLIP10.74□□□□□ -0.69
CLK3-222ENST00000568232 CLEC12BQ2HXU8 276 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 CILP2Q8IUL8 1156 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 GCNT2Q8N0V5 402 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 ZNF441Q8N8Z8 693 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 FAM13CQ8NE31 585 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 OR10G3Q8NGC4 313 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 OR5L2Q8NGL0 311 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 OR8K3Q8NH51 312 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 CD200R1Q8TD46 325 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 TMEM171Q8WVE6 324 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 NEIL2Q969S2 332 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 MARK4Q96L34 752 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 TSNARE1Q96NA8 513 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 RUNDC3BQ96NL0 473 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 CSF3RQ99062 836 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 HAUS8Q9BT25 410 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 DOHHQ9BU89 302 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 SFXN3Q9BWM7 321 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 REG4Q9BYZ8 158 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 ZNF701Q9NV72 531 aaPredicted RBP10.74□□□□□ -0.69
CLK3-222ENST00000568232 SYBUQ9NX95 663 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 VTI1BQ9UEU0 232 aa10.74□□□□□ -0.69
CLK3-222ENST00000568232 CHCHD2Q9Y6H1 151 aaPredicted RBP10.74□□□□□ -0.69
CLK3-222ENST00000568232 TRIM3O75382 744 aaPredicted RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 ZSCAN5DPP0CG00 497 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 FAM157CP0CG43 387 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 OGNP20774 298 aaKnown RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 CCND1P24385 295 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 MGAT1P26572 445 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 AHRP35869 848 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 RAB38P57729 211 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 TPM4P67936 248 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 CTBP1Q13363 440 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 CSHL1Q14406 222 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 RBBP5Q15291 538 aaKnown RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 MPEG1Q2M385 716 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 EIPR1Q53HC9 387 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 BICRALQ6AI39 1079 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 C22orf34Q6ZV56 151 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 ZNF550Q7Z398 422 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 ZNF595Q8IYB9 648 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 TBC1D19Q8N5T2 526 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 OR14A16Q8NHC5 309 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 ZNF721Q8TF20 911 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 EEF1AKMT1Q8WVE0 214 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 ANKRD9Q96BM1 317 aaPredicted RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 SPACA9Q96E40 222 aaPredicted RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 ZC3HAV1LQ96H79 300 aaKnown RBP10.73□□□□□ -0.69
CLK3-222ENST00000568232 GNRHR2Q96P88 292 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 TUBA1CQ9BQE3 449 aa10.73□□□□□ -0.69
CLK3-222ENST00000568232 MED18Q9BUE0 208 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms