RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MTFMTQ96DP5 389 aaKnown RBP12.53□□□□□ -0.4
CLK3-216ENST00000564468 L3HYPDHQ96EM0 354 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 VMP1Q96GC9 406 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 TMEM237Q96Q45 408 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CSF3RQ99062 836 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 ALOXE3Q9BYJ1 711 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 DEFB126Q9BYW3 111 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 DDX31Q9H8H2 851 aaKnown RBP12.53□□□□□ -0.4
CLK3-216ENST00000564468 BRF2Q9HAW0 419 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 PLA2G3Q9NZ20 509 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 VTI1BQ9UEU0 232 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CSAG2Q9Y5P2 127 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CLCA3PQ9Y6N3 262 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 UTP20O75691 2785 aaKnown RBP12.52□□□□□ -0.4
CLK3-216ENST00000564468 ARHGAP10A1A4S6 786 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 ENO4A6NNW6 628 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 FCHO1O14526 889 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 DYRK3O43781 588 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 COX7A2P14406 83 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 KRT4P19013 534 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 TNNI3P19429 210 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 HMOX2P30519 316 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 HNRNPFP52597 415 aaKnown RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 PKNOX1P55347 436 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 LCP2Q13094 533 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 ZYG11AQ6WRX3 759 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 SH2D5Q6ZV89 423 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 GPRIN3Q6ZVF9 776 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 CLNKQ7Z7G1 428 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 RPS19BP1Q86WX3 136 aaKnown RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 CRLF3Q8IUI8 442 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 CCDC63Q8NA47 563 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 TMEM52Q8NDY8 209 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 CATSPER1Q8NEC5 780 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 NFAM1Q8NET5 270 aaPredicted RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 OR14A16Q8NHC5 309 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 ZNF382Q96SR6 550 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 UTP23Q9BRU9 249 aaKnown RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 IQCGQ9H095 443 aaKnown RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 CDCP1Q9H5V8 836 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 RPF2Q9H7B2 306 aaKnown RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 ADAM29Q9UKF5 820 aa12.52□□□□□ -0.41
CLK3-216ENST00000564468 PPIEQ9UNP9 301 aaKnown RBP12.52□□□□□ -0.41
CLK3-216ENST00000564468 A0A0A6YYD5 115 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 PROM1O43490 865 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 GUCY1B2O75343 617 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 OR4F21O95013 312 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 PROCP04070 461 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 ENO1P06733 434 aaKnown RBP12.51□□□□□ -0.41
CLK3-216ENST00000564468 FAM58BPP0C7Q3 252 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 HSD3B1P14060 373 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 TSPAN8P19075 237 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 HSD3B2P26439 372 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 BSGP35613 385 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 TNFRSF17Q02223 184 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 SLC18A2Q05940 514 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 ERCC6LQ2NKX8 1250 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 CFAP157Q5JU67 520 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 FCRLBQ6BAA4 426 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 MRM1Q6IN84 353 aaKnown RBP12.51□□□□□ -0.41
CLK3-216ENST00000564468 LETMD1Q6P1Q0 360 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 FAM180AQ6UWF9 173 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 RPS27LQ71UM5 84 aaKnown RBP12.51□□□□□ -0.41
CLK3-216ENST00000564468 HOMEZQ8IX15 550 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 BEST3Q8N1M1 668 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 MORN4Q8NDC4 146 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 METTL6Q8TCB7 284 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 PELOQ9BRX2 385 aaKnown RBP12.51□□□□□ -0.41
CLK3-216ENST00000564468 SORBS1Q9BX66 1292 aaKnown RBP12.51□□□□□ -0.41
CLK3-216ENST00000564468 ASF1BQ9NVP2 202 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 SLC12A4Q9UP95 1085 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 PCDHGB6Q9Y5F9 930 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 CLDN16Q9Y5I7 305 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 NBPF19A0A087WUL8 3843 aa12.51□□□□□ -0.41
CLK3-216ENST00000564468 GABRR3A8MPY1 467 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 PLIN3O60664 434 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 PRAMEF2O60811 474 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 LDB3O75112 727 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 ULK1O75385 1050 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 EEDO75530 441 aaKnown RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 ZFAND5O76080 213 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 ETHE1O95571 254 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 PDYNP01213 254 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 NR2F6P10588 404 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 CPA3P15088 417 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 CD46P15529 392 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 HNRNPH2P55795 449 aaKnown RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 DNAJB13P59910 316 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 OC90Q02509 493 aaPredicted RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 ASPHQ12797 758 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 CSTF3Q12996 717 aaKnown RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 ELOAQ14241 798 aaKnown RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 PRR30Q53SZ7 412 aaPredicted RBP12.5□□□□□ -0.41
CLK3-216ENST00000564468 SGO1Q5FBB7 561 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 ARMC10Q8N2F6 343 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 METTL4Q8N3J2 472 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 KIF2BQ8N4N8 673 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 MREGQ8N565 214 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 CCNYL1Q8N7R7 359 aa12.5□□□□□ -0.41
CLK3-216ENST00000564468 BCORP1Q8N888 145 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms