RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 LCP2Q13094 533 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 ZYG11AQ6WRX3 759 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 SH2D5Q6ZV89 423 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 GPRIN3Q6ZVF9 776 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 CLNKQ7Z7G1 428 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 RPS19BP1Q86WX3 136 aaKnown RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 CRLF3Q8IUI8 442 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 CCDC63Q8NA47 563 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 TMEM52Q8NDY8 209 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 CATSPER1Q8NEC5 780 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 NFAM1Q8NET5 270 aaPredicted RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 OR14A16Q8NHC5 309 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 ZNF382Q96SR6 550 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 UTP23Q9BRU9 249 aaKnown RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 IQCGQ9H095 443 aaKnown RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 CDCP1Q9H5V8 836 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 RPF2Q9H7B2 306 aaKnown RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 ADAM29Q9UKF5 820 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 PPIEQ9UNP9 301 aaKnown RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 A0A0A6YYD5 115 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 PROM1O43490 865 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 GUCY1B2O75343 617 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 OR4F21O95013 312 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 PROCP04070 461 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 ENO1P06733 434 aaKnown RBP12.51□□□□□ -0.41
CLK3-213ENST00000563842 FAM58BPP0C7Q3 252 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 HSD3B1P14060 373 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 TSPAN8P19075 237 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 HSD3B2P26439 372 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 BSGP35613 385 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 TNFRSF17Q02223 184 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 SLC18A2Q05940 514 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 ERCC6LQ2NKX8 1250 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 CFAP157Q5JU67 520 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 FCRLBQ6BAA4 426 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 MRM1Q6IN84 353 aaKnown RBP12.51□□□□□ -0.41
CLK3-213ENST00000563842 LETMD1Q6P1Q0 360 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 FAM180AQ6UWF9 173 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 RPS27LQ71UM5 84 aaKnown RBP12.51□□□□□ -0.41
CLK3-213ENST00000563842 HOMEZQ8IX15 550 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 BEST3Q8N1M1 668 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 MORN4Q8NDC4 146 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 METTL6Q8TCB7 284 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 PELOQ9BRX2 385 aaKnown RBP12.51□□□□□ -0.41
CLK3-213ENST00000563842 SORBS1Q9BX66 1292 aaKnown RBP12.51□□□□□ -0.41
CLK3-213ENST00000563842 ASF1BQ9NVP2 202 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 SLC12A4Q9UP95 1085 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 PCDHGB6Q9Y5F9 930 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 CLDN16Q9Y5I7 305 aa12.51□□□□□ -0.41
CLK3-213ENST00000563842 GABRR3A8MPY1 467 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 PLIN3O60664 434 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 PRAMEF2O60811 474 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 LDB3O75112 727 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 ULK1O75385 1050 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 EEDO75530 441 aaKnown RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 ZFAND5O76080 213 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 ETHE1O95571 254 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 PDYNP01213 254 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 NR2F6P10588 404 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 CPA3P15088 417 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 CD46P15529 392 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 HNRNPH2P55795 449 aaKnown RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 DNAJB13P59910 316 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 OC90Q02509 493 aaPredicted RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 ASPHQ12797 758 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 CSTF3Q12996 717 aaKnown RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 ELOAQ14241 798 aaKnown RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 PRR30Q53SZ7 412 aaPredicted RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 SGO1Q5FBB7 561 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 ARMC10Q8N2F6 343 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 METTL4Q8N3J2 472 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 KIF2BQ8N4N8 673 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 MREGQ8N565 214 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 CCNYL1Q8N7R7 359 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 BCORP1Q8N888 145 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 CDYL2Q8N8U2 506 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 GBP7Q8N8V2 638 aaPredicted RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 APCDD1LQ8NCL9 501 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 NCLNQ969V3 563 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 RBM18Q96H35 190 aaKnown RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 ART5Q96L15 291 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 DGAT2Q96PD7 388 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 BARD1Q99728 777 aaKnown RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 ZNF717Q9BY31 904 aaPredicted RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 PARD6BQ9BYG5 372 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 MKS1Q9NXB0 559 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 COPS7AQ9UBW8 275 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLK3-213ENST00000563842 EMCNQ9ULC0 261 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 ATG4BQ9Y4P1 393 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 ASB4Q9Y574 426 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 V9GYY5 206 aaPredicted RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 HIVEP3Q5T1R4 2406 aa12.5□□□□□ -0.41
CLK3-213ENST00000563842 UBR5O95071 2799 aaPredicted RBP12.5□□□□□ -0.41
CLK3-213ENST00000563842 TRBV11-1A0A0K0K1C0 115 aa12.49□□□□□ -0.41
CLK3-213ENST00000563842 C17orf105B2RV13 164 aa12.49□□□□□ -0.41
CLK3-213ENST00000563842 G3V2L1 256 aa12.49□□□□□ -0.41
CLK3-213ENST00000563842 TGFBR3LH3BV60 316 aa12.49□□□□□ -0.41
CLK3-213ENST00000563842 PPP6CO00743 305 aa12.49□□□□□ -0.41
CLK3-213ENST00000563842 TMPRSS11DO60235 418 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms