RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZBTB26Q9HCK0 441 aa8.79□□□□□ -1
VPS39-205ENST00000562258 NEUROD4Q9HD90 331 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ANKRD10Q9NXR5 420 aa8.79□□□□□ -1
VPS39-205ENST00000562258 CALML5Q9NZT1 146 aa8.79□□□□□ -1
VPS39-205ENST00000562258 MAGEL2Q9UJ55 1249 aa8.79□□□□□ -1
VPS39-205ENST00000562258 SAMD4AQ9UPU9 718 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 MDC1Q14676 2089 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 IGHV3-20A0A0C4DH32 117 aa8.79□□□□□ -1
VPS39-205ENST00000562258 SPAARA0A1B0GVQ0 90 aa8.79□□□□□ -1
VPS39-205ENST00000562258 A0A1W2PP18 115 aa8.79□□□□□ -1
VPS39-205ENST00000562258 SLC5A10A0PJK1 596 aa8.79□□□□□ -1
VPS39-205ENST00000562258 OR2W5A6NFC9 320 aa8.79□□□□□ -1
VPS39-205ENST00000562258 WWP2O00308 870 aa8.79□□□□□ -1
VPS39-205ENST00000562258 JRKO75564 520 aa8.79□□□□□ -1
VPS39-205ENST00000562258 PRKRAO75569 313 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 HBQ1P09105 142 aa8.79□□□□□ -1
VPS39-205ENST00000562258 OR1E2P47887 323 aa8.79□□□□□ -1
VPS39-205ENST00000562258 CORO7P57737 925 aa8.79□□□□□ -1
VPS39-205ENST00000562258 DMWDQ09019 674 aa8.79□□□□□ -1
VPS39-205ENST00000562258 BNIP2Q12982 314 aa8.79□□□□□ -1
VPS39-205ENST00000562258 FZD2Q14332 565 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ZNF423Q2M1K9 1284 aa8.79□□□□□ -1
VPS39-205ENST00000562258 FLYWCH1Q4VC44 716 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TMEM214Q6NUQ4 689 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 TMEM64Q6YI46 380 aa8.79□□□□□ -1
VPS39-205ENST00000562258 PGAM4Q8N0Y7 254 aa8.79□□□□□ -1
VPS39-205ENST00000562258 STX19Q8N4C7 294 aa8.79□□□□□ -1
VPS39-205ENST00000562258 CLEC1AQ8NC01 280 aa8.79□□□□□ -1
VPS39-205ENST00000562258 C16orf78Q8WTQ4 265 aa8.79□□□□□ -1
VPS39-205ENST00000562258 CIB1Q99828 191 aa8.79□□□□□ -1
VPS39-205ENST00000562258 PRRG3Q9BZD7 231 aa8.79□□□□□ -1
VPS39-205ENST00000562258 DMRT3Q9NQL9 472 aa8.79□□□□□ -1
VPS39-205ENST00000562258 C2orf42Q9NWW7 574 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ZIM2Q9NZV7 527 aa8.79□□□□□ -1
VPS39-205ENST00000562258 P2RX2Q9UBL9 471 aa8.79□□□□□ -1
VPS39-205ENST00000562258 AP1M2Q9Y6Q5 423 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TLCD2A6NGC4 264 aa8.79□□□□□ -1
VPS39-205ENST00000562258 SEC14L5O43304 696 aa8.79□□□□□ -1
VPS39-205ENST00000562258 HNRNPRO43390 633 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 RSL1D1O76021 490 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 NPPBP16860 134 aa8.79□□□□□ -1
VPS39-205ENST00000562258 CXCR1P25024 350 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ATP5A1P25705 553 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 GCAP28676 217 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TOP3AQ13472 1001 aaPredicted RBP8.79□□□□□ -1
VPS39-205ENST00000562258 GTDC1Q4AE62 458 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ERICH5Q6P6B1 374 aa8.79□□□□□ -1
VPS39-205ENST00000562258 C6orf120Q7Z4R8 191 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ZFAND4Q86XD8 727 aa8.79□□□□□ -1
VPS39-205ENST00000562258 FBXW8Q8N3Y1 598 aa8.79□□□□□ -1
VPS39-205ENST00000562258 DHRSXQ8N5I4 330 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TP53INP1Q96A56 240 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TBC1D20Q96BZ9 403 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ZNF317Q96PQ6 595 aaPredicted RBP8.79□□□□□ -1
VPS39-205ENST00000562258 NRTNQ99748 197 aa8.79□□□□□ -1
VPS39-205ENST00000562258 EMCNQ9ULC0 261 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ELOA3DA6NLF2 546 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 G3V3Y1 287 aa8.78□□□□□ -1
VPS39-205ENST00000562258 OPN1LWP04000 364 aa8.78□□□□□ -1
VPS39-205ENST00000562258 HIST1H1TP22492 207 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 UGT2B15P54855 530 aa8.78□□□□□ -1
VPS39-205ENST00000562258 EXOSC7Q15024 291 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 ELOA3BQ3SY89 546 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PLK5Q496M5 336 aa8.78□□□□□ -1
VPS39-205ENST00000562258 FAM91A1Q658Y4 838 aa8.78□□□□□ -1
VPS39-205ENST00000562258 DGLUCYQ7Z3D6 616 aa8.78□□□□□ -1
VPS39-205ENST00000562258 DPP10Q8N608 796 aa8.78□□□□□ -1
VPS39-205ENST00000562258 FAM98AQ8NCA5 519 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 CADM4Q8NFZ8 388 aa8.78□□□□□ -1
VPS39-205ENST00000562258 ELOA3Q8NG57 546 aa8.78□□□□□ -1
VPS39-205ENST00000562258 OR5T3Q8NGG3 340 aa8.78□□□□□ -1
VPS39-205ENST00000562258 SLC38A4Q969I6 547 aa8.78□□□□□ -1
VPS39-205ENST00000562258 ZUFSPQ96AP4 578 aa8.78□□□□□ -1
VPS39-205ENST00000562258 CIDECQ96AQ7 238 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 TCTN2Q96GX1 697 aa8.78□□□□□ -1
VPS39-205ENST00000562258 CEP19Q96LK0 163 aa8.78□□□□□ -1
VPS39-205ENST00000562258 CDC6Q99741 560 aa8.78□□□□□ -1
VPS39-205ENST00000562258 ACPTQ9BZG2 426 aa8.78□□□□□ -1
VPS39-205ENST00000562258 RASSF1Q9NS23 344 aa8.78□□□□□ -1
VPS39-205ENST00000562258 RHCGQ9UBD6 479 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PTBP2Q9UKA9 531 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 SNTNA6NMZ2 147 aa8.78□□□□□ -1
VPS39-205ENST00000562258 KLF11O14901 512 aa8.78□□□□□ -1
VPS39-205ENST00000562258 YKT6O15498 198 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PRKD3O94806 890 aa8.78□□□□□ -1
VPS39-205ENST00000562258 TNFSF15O95150 251 aa8.78□□□□□ -1
VPS39-205ENST00000562258 TACR1P25103 407 aa8.78□□□□□ -1
VPS39-205ENST00000562258 CLK1P49759 484 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 B4GALNT1Q00973 533 aa8.78□□□□□ -1
VPS39-205ENST00000562258 NR1D2Q14995 579 aa8.78□□□□□ -1
VPS39-205ENST00000562258 C6orf132Q5T0Z8 1188 aa8.78□□□□□ -1
VPS39-205ENST00000562258 ARMC3Q5W041 872 aa8.78□□□□□ -1
VPS39-205ENST00000562258 RBM44Q6ZP01 1051 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 NEK10Q6ZWH5 1172 aa8.78□□□□□ -1
VPS39-205ENST00000562258 P4HA3Q7Z4N8 544 aa8.78□□□□□ -1
VPS39-205ENST00000562258 KIAA0907Q7Z7F0 614 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 FAM217AQ8IXS0 508 aa8.78□□□□□ -1
VPS39-205ENST00000562258 SLC35F3Q8IY50 421 aa8.78□□□□□ -1
VPS39-205ENST00000562258 CYP4Z2PQ8N1L4 340 aa8.78□□□□□ -1
VPS39-205ENST00000562258 LNX2Q8N448 690 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms