RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ARL10Q8N8L6 244 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ACOT4Q8N9L9 421 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 PJA1Q8NG27 643 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 OR4E2Q8NGC2 313 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 SUN3Q8TAQ9 357 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 FBXO30Q8TB52 745 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ZDHHC1Q8WTX9 485 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 GFM2Q969S9 779 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 MIEF2Q96C03 454 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 MVB12AQ96EY5 273 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 F2RL3Q96RI0 385 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 C17orf62Q9BQA9 187 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 PSD2Q9BQI7 771 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 DUSP23Q9BVJ7 150 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ZNF717Q9BY31 904 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 PRRG3Q9BZD7 231 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 TMEM168Q9H0V1 697 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ING2Q9H160 280 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 DUSP15Q9H1R2 295 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 CHST8Q9H2A9 424 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 SLC6A20Q9NP91 592 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 CCNB1IP1Q9NPC3 277 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ENAMQ9NRM1 1142 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 CUEDC1Q9NWM3 386 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 GIN1Q9NXP7 522 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 KLHL28Q9NXS3 571 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 DLGAP2Q9P1A6 1054 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ZNF624Q9P2J8 865 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 SLC13A4Q9UKG4 626 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 POMT2Q9UKY4 750 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 A0A087WV62 115 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 IGKV1-8A0A0C4DH67 115 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 A0A0G2JPF8 293 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 OR6C74A6NCV1 312 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 MYO1GB0I1T2 1018 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 HNRNPCL2B2RXH8 293 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 HNRNPCL3B7ZW38 293 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ZNF701M0R085 212 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 TLR4O00206 839 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 SYT5O00445 386 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 PLOD2O00469 737 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 EI24O14681 340 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 HAT1O14929 419 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 AXIN1O15169 862 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TOX3O15405 576 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 EMC8O43402 210 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 DYRK3O43781 588 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TPST1O60507 370 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 JRKO75564 520 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 SMNDC1O75940 238 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS39-204ENST00000561818 FUCA1P04066 466 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 IFNW1P05000 195 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ALPLP05186 524 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 SERPIND1P05546 499 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 MSL3P1P0C860 447 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 HNRNPCL4P0DMR1 293 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CD1EP15812 388 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 NCK1P16333 377 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 UGT2B7P16662 529 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ALOX12P18054 663 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 RHCEP18577 417 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 RRM2P31350 389 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CDKN2CP42773 168 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CCT3P49368 545 aaKnown RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 NCBP2P52298 156 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS39-204ENST00000561818 PLA2G16P53816 162 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 PCBP3P57721 371 aaKnown RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 NUP107P57740 925 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 GABARAPL2P60520 117 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CXCR4P61073 352 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CYP4F2P78329 520 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TNFRSF17Q02223 184 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 SLAMF1Q13291 335 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 KEAP1Q14145 624 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 FAM53BQ14153 422 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 FZD2Q14332 565 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 NRF1Q16656 503 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 EIPR1Q53HC9 387 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 DUS1LQ6P1R4 473 aaKnown RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 BORAQ6PGQ7 559 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TTC33Q6PID6 262 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 FIGLAQ6QHK4 219 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 UGT2A3Q6UWM9 527 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CEACAM20Q6UY09 585 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ZNF438Q7Z4V0 828 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 AMIGO2Q86SJ2 522 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 PTOV1Q86YD1 416 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CLECL1Q8IZS7 167 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 GALNT4Q8N4A0 578 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ZNF740Q8NDX6 193 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 OR4K14Q8NGD5 310 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 MAGEE2Q8TD90 523 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 DNASE2BQ8WZ79 361 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TMBIM1Q969X1 311 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TSACCQ96A04 125 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 TM4SF19Q96DZ7 209 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 OTUB1Q96FW1 271 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 CNDP2Q96KP4 475 aaKnown RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 SLC35G5Q96KT7 338 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 CNBD2Q96M20 576 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms