RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SLAMF7Q9NQ25 335 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 AIG1Q9NVV5 245 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 ASIC5Q9NY37 505 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 ZIM2Q9NZV7 527 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 ERRFI1Q9UJM3 462 aaPredicted RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 ADAM29Q9UKF5 820 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 TNRC6AQ8NDV7 1962 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 H0YGG7 62 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 PCDH7O60245 1069 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 LCMT2O60294 686 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 PRMT3O60678 531 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 DPM1O60762 260 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 SH3BGRLO75368 114 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 DDAH2O95865 285 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 PVRP15151 417 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 ST6GAL1P15907 406 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 PRDX6P30041 224 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 HPCAL1P37235 193 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 SSR2P43308 183 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 MAPK12P53778 367 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 PLA2G16P53816 162 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 ARF3P61204 181 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 KLF10Q13118 480 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 CYLC2Q14093 348 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 SLC9A5Q14940 896 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 FAM214AQ32MH5 1076 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 PDCD4Q53EL6 469 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 AGKQ53H12 422 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 TMEM198Q66K66 360 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 OR4C11Q6IEV9 310 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 FAM198BQ6UWH4 519 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 MAMDC2Q7Z304 686 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 R3HCC1LQ7Z5L2 792 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 BPHLQ86WA6 291 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 METTL4Q8N3J2 472 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 TMEM132CQ8N3T6 1108 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 LIX1Q8N485 282 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 FITM2Q8N6M3 262 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 C1orf52Q8N6N3 182 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 ANKRD53Q8N9V6 530 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 TTC29Q8NA56 475 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 PCYOX1LQ8NBM8 494 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 VPS37AQ8NEZ2 397 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 OR2L5Q8NG80 312 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 OR2T11Q8NH01 316 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 CDC26Q8NHZ8 85 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 RP9Q8TA86 221 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 NT5CQ8TCD5 201 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 CHTF18Q8WVB6 975 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 GAL3ST3Q96A11 431 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 F2RL3Q96RI0 385 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 FAIM2Q9BWQ8 316 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 MS4A8Q9BY19 250 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 MRPL1Q9BYD6 325 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 SLC7A5P2Q9GIP4 190 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 MYLK2Q9H1R3 596 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 SDR39U1Q9NRG7 319 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 ATAD3AQ9NVI7 634 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 NDE1Q9NXR1 346 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 ARMCX1Q9P291 453 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 TAGLN3Q9UI15 199 aa11.14□□□□□ -0.63
LDLR-212ENST00000560467 POLR3HQ9Y535 204 aaPredicted RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 COPG1Q9Y678 874 aaKnown RBP11.14□□□□□ -0.63
LDLR-212ENST00000560467 ERICH4A6NGS2 130 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 ENO4A6NNW6 628 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 MEN1O00255 615 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 SAP18O00422 153 aaKnown RBP11.13□□□□□ -0.63
LDLR-212ENST00000560467 ANGPT2O15123 496 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 ERI3O43414 337 aaKnown RBP11.13□□□□□ -0.63
LDLR-212ENST00000560467 B3GALT2O43825 422 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 IL6P05231 212 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 KLK1P06870 262 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 SNRPB2P08579 225 aaKnown RBP11.13□□□□□ -0.63
LDLR-212ENST00000560467 PRR35P0CG20 571 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 G6PDP11413 515 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 BCKDHAP12694 445 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 CALB2P22676 271 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 TLX1P31314 330 aaPredicted RBP11.13□□□□□ -0.63
LDLR-212ENST00000560467 TIA1P31483 386 aaKnown RBP eCLIP11.13□□□□□ -0.63
LDLR-212ENST00000560467 VSX2P58304 361 aaPredicted RBP11.13□□□□□ -0.63
LDLR-212ENST00000560467 ART3Q13508 389 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 ATP1A4Q13733 1029 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 GRM7Q14831 915 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 HEPACAMQ14CZ8 416 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 HERC3Q15034 1050 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 ZIC1Q15915 447 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 FAM91A1Q658Y4 838 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 GALNT18Q6P9A2 607 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 IKBIPQ70UQ0 350 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 RNF44Q7L0R7 432 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 COMMD6Q7Z4G1 85 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 YTHDF3Q7Z739 585 aaKnown RBP11.13□□□□□ -0.63
LDLR-212ENST00000560467 DSELQ8IZU8 1212 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 TSPEARQ8WU66 669 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 PNPLA2Q96AD5 504 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 APIPQ96GX9 242 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 OR2A5Q96R48 311 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 C17orf62Q9BQA9 187 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 SPNS1Q9H2V7 528 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 WDR41Q9HAD4 459 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms