RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ABCE1P61221 599 aaKnown RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 IGLV3-21P80748 117 aaPredicted RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 HMGCS1Q01581 520 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 ACTN3Q08043 901 aaPredicted RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 STX4Q12846 297 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 ELAVL1Q15717 326 aaKnown RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 LACTB2Q53H82 288 aaPredicted RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 SH2D4BQ5SQS7 431 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 CLEC6AQ6EIG7 209 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 C1orf52Q8N6N3 182 aaKnown RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 TMEM52Q8NDY8 209 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 M1APQ8TC57 530 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 TWIST2Q8WVJ9 160 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 SLC39A7Q92504 469 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 TM9SF4Q92544 642 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 ARL8AQ96BM9 186 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 MESP1Q9BRJ9 268 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 FAIM2Q9BWQ8 316 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 SHCBP1LQ9BZQ2 653 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 TNFRSF12AQ9NP84 129 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 ADAP2Q9NPF8 381 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 NECTIN3Q9NQS3 549 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 PPIEQ9UNP9 301 aaKnown RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 WBP11Q9Y2W2 641 aaKnown RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 ZNF451Q9Y4E5 1061 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 CLDN16Q9Y5I7 305 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 DNAJC15Q9Y5T4 150 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 SCN3AQ9NY46 2000 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 MGAQ8IWI9 3026 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 CHD6Q8TD26 2715 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 IGSF10Q6WRI0 2623 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 A0A1W2PR48 441 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 C1orf226A1L170 272 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 OR2W5A6NFC9 320 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 PCDH7O60245 1069 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 MYO1DO94832 1006 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 SEC24DO94855 1032 aaPredicted RBP12.18□□□□□ -0.46
NEDD8-208ENST00000560427 AIFM1O95831 613 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 GBAP04062 536 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 PRR35P0CG20 571 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 CHN1P15882 459 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 SERPINB3P29508 390 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 TIA1P31483 386 aaKnown RBP eCLIP12.18□□□□□ -0.46
NEDD8-208ENST00000560427 WDR4P57081 412 aaKnown RBP12.18□□□□□ -0.46
NEDD8-208ENST00000560427 PLIN5Q00G26 463 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 LY6DQ14210 128 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 SOWAHCQ53LP3 525 aaPredicted RBP12.18□□□□□ -0.46
NEDD8-208ENST00000560427 TTMPQ5BVD1 217 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 CRB2Q5IJ48 1285 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 SPDYAQ5MJ70 313 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 NDUFAF5Q5TEU4 345 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 AGAP7PQ5VUJ5 663 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 PARP9Q8IXQ6 854 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 TMEM132CQ8N3T6 1108 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 DAZLQ92904 295 aaKnown RBP12.18□□□□□ -0.46
NEDD8-208ENST00000560427 ZBTB9Q96C00 473 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 AGAP4Q96P64 663 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 PAIP2Q9BPZ3 127 aaKnown RBP12.18□□□□□ -0.46
NEDD8-208ENST00000560427 NUDT9Q9BW91 350 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 MMP25Q9NPA2 562 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 VTI1BQ9UEU0 232 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 HAO1Q9UJM8 370 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 TMED5Q9Y3A6 229 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 RAP2CQ9Y3L5 183 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 CCL27Q9Y4X3 112 aa12.18□□□□□ -0.46
NEDD8-208ENST00000560427 CCDC88CQ9P219 2028 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 UQCRHLA0A096LP55 91 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 WDR91A4D1P6 747 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 EIF4E1BA6NMX2 242 aaKnown RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 CDK2AP1O14519 115 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 DYRK3O43781 588 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 FGF17O60258 216 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 UQCRHP07919 91 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 COX7A2P14406 83 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 DRD2P14416 443 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 BGNP21810 368 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 ARRB2P32121 409 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 GALNSP34059 522 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 STT3AP46977 705 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 SLC1A6P48664 564 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 SLC26A5P58743 744 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 ZNF763Q0D2J5 394 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 Q0VFX4 171 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 STX3Q13277 289 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 HEPACAMQ14CZ8 416 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 BTBD16Q32M84 506 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 UGT3A2Q3SY77 523 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 XKR7Q5GH72 579 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 ATG16L1Q676U5 607 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 C18orf63Q68DL7 685 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 IGFL3Q6UXB1 125 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 LGI4Q8N135 537 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 B3GNT7Q8NFL0 401 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 OR14A16Q8NHC5 309 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 ANKRD9Q96BM1 317 aaPredicted RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 APIPQ96GX9 242 aa12.17□□□□□ -0.46
NEDD8-208ENST00000560427 THOC3Q96J01 351 aaKnown RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 BBC3Q96PG8 261 aaPredicted RBP12.17□□□□□ -0.46
NEDD8-208ENST00000560427 ALOXE3Q9BYJ1 711 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms