RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ATG4BQ9Y4P1 393 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 CCL27Q9Y4X3 112 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 ASB4Q9Y574 426 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 NUP210LQ5VU65 1888 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 SCN3AQ9NY46 2000 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 CELSR3Q9NYQ7 3312 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 LOC102723996A0A087X1L8 192 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ATP6AP2A0A1C7CYW4 349 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TCP11X1B4DZS4 312 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 CYR61O00622 381 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 POLR3GO15318 223 aaPredicted RBP9.47□□□□□ -0.89
USP3-216ENST00000559873 NKX2-8O15522 239 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 PROM1O43490 865 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 KLHL41O60662 606 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 PEX11AO75192 247 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ATP6AP2O75787 350 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 IL3P08700 152 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TROVE2P10155 538 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP3-216ENST00000559873 PRPS2P11908 318 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 LBPP18428 481 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 PIK3R1P27986 724 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 HPCAL1P37235 193 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 MDH1P40925 334 aaKnown RBP9.47□□□□□ -0.89
USP3-216ENST00000559873 ALDH9A1P49189 494 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TAS2R50P59544 299 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 PLIN5Q00G26 463 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 RHAGQ02094 409 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ACTN3Q08043 901 aaPredicted RBP9.47□□□□□ -0.89
USP3-216ENST00000559873 SRSF6Q13247 344 aaKnown RBP9.47□□□□□ -0.89
USP3-216ENST00000559873 ATP1A4Q13733 1029 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TERF2Q15554 542 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 C6orf136Q5SQH8 315 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 FAM219BQ5XKK7 198 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 NOXRED1Q6NXP6 359 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TMEM205Q6UW68 189 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ATG14Q6ZNE5 492 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 SCUBE1Q8IWY4 988 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 CLEC1AQ8NC01 280 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ADAMTS17Q8TE56 1095 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 SNRNP27Q8WVK2 155 aaKnown RBP9.47□□□□□ -0.89
USP3-216ENST00000559873 FCRL1Q96LA6 429 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 PPP1R36Q96LQ0 422 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 LPAR4Q99677 370 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TUBB6Q9BUF5 446 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 CCDC134Q9H6E4 229 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 CPNE5Q9HCH3 593 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 SLCO1B3Q9NPD5 702 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 TEX10Q9NXF1 929 aaPredicted RBP9.47□□□□□ -0.89
USP3-216ENST00000559873 P4HTMQ9NXG6 502 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ASIC5Q9NY37 505 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 KCMF1Q9P0J7 381 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 ENTPD4Q9Y227 616 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 DLGAP4Q9Y2H0 992 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 PCDHA9Q9Y5H5 950 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 HS3ST3B1Q9Y662 390 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 USH1CQ9Y6N9 552 aa9.47□□□□□ -0.89
USP3-216ENST00000559873 USP24Q9UPU5 2620 aa9.46□□□□□ -0.89
USP3-216ENST00000559873 IGKV3D-11A0A0A0MRZ8 115 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 NSG1A0A0A6YYJ2 146 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 A0A1W2PQ72 361 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 A0A1W2PR48 441 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 TCRBV16S1A1N1A0A5B0 115 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 FAM227AF5H4B4 570 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 OR10H2O60403 315 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 EDF1O60869 148 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 DIAPH2O60879 1101 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 HPP00738 406 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 IFNA16P05015 189 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 JUNP05412 331 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 VIMP08670 466 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 PRR35P0CG20 571 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 WT1P19544 449 aaPredicted RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 DDCP20711 480 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 MAOAP21397 527 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 OR4D2P58180 307 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 RAE1P78406 368 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 GUCY1A3Q02108 690 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 EMX2Q04743 252 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 EEF1A2Q05639 463 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 KIAA0040Q15053 153 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 RFTN2Q52LD8 501 aaPredicted RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 SFT2D3Q587I9 215 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 FAM69BQ5VUD6 431 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 C18orf63Q68DL7 685 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 NXNQ6DKJ4 435 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 FAAH2Q6GMR7 532 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 OGFOD2Q6N063 350 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 SLC48A1Q6P1K1 146 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 NDUFAF7Q7L592 441 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 GPR155Q7Z3F1 870 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 R3HCC1LQ7Z5L2 792 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 CPEB2Q7Z5Q1 589 aaKnown RBP9.46□□□□□ -0.9
USP3-216ENST00000559873 ANKRD37Q7Z713 158 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 CLNKQ7Z7G1 428 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 LAPTM4BQ86VI4 370 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 OR11G2Q8NGC1 345 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 OR4K14Q8NGD5 310 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 ACTRT2Q8TDY3 377 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 C16orf78Q8WTQ4 265 aa9.46□□□□□ -0.9
USP3-216ENST00000559873 STON2Q8WXE9 905 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms