RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TRGV5A0A0B4J1U4 118 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 A0A0G2JNJ9 132 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 HSPB2A8KAH6 182 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 G3V3Y1 287 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 S100BP04271 92 aaPredicted RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 TCP1P17987 556 aaKnown RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 CPN2P22792 545 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 CERS1P27544 350 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 KIR2DL3P43628 341 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 DNASE1L1P49184 302 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 NR0B1P51843 470 aaKnown RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 ATP6V0D1P61421 351 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 PPP2R2AP63151 447 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 IRF8Q02556 426 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 FOXO1Q12778 655 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 PDIA2Q13087 525 aaKnown RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 DOC2AQ14183 400 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 HSPB2Q16082 182 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 C18orf21Q32NC0 220 aaPredicted RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 C1orf185Q5T7R7 199 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 RIPPLY2Q5TAB7 128 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 DND1Q8IYX4 353 aaKnown RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 ACOT4Q8N9L9 421 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 NUBPLQ8TB37 319 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 SLC22A8Q8TCC7 542 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 SLC2A12Q8TD20 617 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 ANKRD49Q8WVL7 239 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 WDR34Q96EX3 536 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 TSPAN17Q96FV3 270 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 SENP5Q96HI0 755 aaPredicted RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 ART5Q96L15 291 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 DGAT2Q96PD7 388 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 CSF3RQ99062 836 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 KRT12Q99456 494 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 POLDIP3Q9BY77 421 aaKnown RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 PHACTR1Q9C0D0 580 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 MS4A12Q9NXJ0 267 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 CD274Q9NZQ7 290 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 TXNDC16Q9P2K2 825 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 B4GALT7Q9UBV7 327 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 Q9UFV3 132 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 BOKQ9UMX3 212 aaPredicted RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 SNX12Q9UMY4 172 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 ATG4BQ9Y4P1 393 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 PCDHGB3Q9Y5G1 929 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 FAM215AQ9Y5M1 114 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 PSAT1Q9Y617 370 aa8.48□□□□□ -1.05
HDDC3-204ENST00000559834 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.48□□□□□ -1.05
HDDC3-204ENST00000559834 PHF3Q92576 2039 aaKnown RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 HIVEP1P15822 2718 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 A0A0G2JMM0 328 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 MYOCOSA0A1B0GUC4 107 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 A0A1W2PPB8 328 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 A0A1W2PRS3 328 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 KIR3DP1A8MWS1 328 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 AHRRA9YTQ3 701 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 SYT5O00445 386 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 TAPBPO15533 448 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ZSCAN12O43309 604 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 DIAPH2O60879 1101 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 LDB3O75112 727 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 CTAG2O75638 210 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ETHE1O95571 254 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 CCL3P10147 92 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ATP5A1P25705 553 aaKnown RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 SERPINB3P29508 390 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 SERPINB1P30740 379 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 TLX1P31314 330 aaPredicted RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 MSH2P43246 934 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 HSPA7P48741 367 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 KCNJ2P63252 427 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 DR1Q01658 176 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ASPHQ12797 758 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 CHIT1Q13231 466 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF460Q14592 562 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 SF3B4Q15427 424 aaKnown RBP eCLIP8.47□□□□□ -1.051e-6■■□□□ 12.8
HDDC3-204ENST00000559834 TBCCQ15814 346 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 PDK4Q16654 411 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF791Q3KP31 576 aaPredicted RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 RTL6Q6ICC9 239 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 VN1R5Q7Z5H4 357 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 WDR53Q7Z5U6 358 aaPredicted RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 TGIF2LYQ8IUE0 185 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ANKMY2Q8IV38 441 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 KLHL7Q8IXQ5 586 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 SLC35F6Q8N357 371 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 LIX1Q8N485 282 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 FBXO36Q8NEA4 188 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 GOT1L1Q8NHS2 421 aaPredicted RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF721Q8TF20 911 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 SREK1Q8WXA9 508 aaKnown RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 CDKL2Q92772 493 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 TANKQ92844 425 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 ANKRD9Q96BM1 317 aaPredicted RBP8.47□□□□□ -1.05
HDDC3-204ENST00000559834 CAPZA3Q96KX2 299 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 PWWP2AQ96N64 755 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 MAPKAP1Q9BPZ7 522 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 CENPKQ9BS16 269 aa8.47□□□□□ -1.05
HDDC3-204ENST00000559834 TMUB1Q9BVT8 246 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms