RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TXNDC8Q6A555 127 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 OR4N4Q8N0Y3 316 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 EXOSC8Q96B26 276 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 CHIAQ9BZP6 476 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 EVA1BQ9NVM1 165 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 TXNL4BQ9NX01 149 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 FAM120CQ9NX05 1096 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 SLC23A1Q9UHI7 598 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 LRFN2Q9ULH4 789 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 CLEC4EQ9ULY5 219 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 CLCA2Q9UQC9 943 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 UNC80Q8N2C7 3258 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 HNRNPCL2B2RXH8 293 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 M0R3H8 397 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ZNF197O14709 1029 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 FRS3O43559 492 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 NTN1O95631 604 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 SLC16A8O95907 504 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 SOX18P35713 384 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 MBTPS1Q14703 1052 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 HEPACAMQ14CZ8 416 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ZMYND11Q15326 602 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 C9orf131Q5VYM1 1079 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ADCK2Q7Z695 626 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 TSEN54Q7Z6J9 526 aaKnown RBP10.82□□□□□ -0.68
LDLR-208ENST00000558518 ATCAYQ86WG3 371 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 CACUL1Q86Y37 369 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 SYNPOQ8N3V7 929 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ZNF740Q8NDX6 193 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 WDR48Q8TAF3 677 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 PMEPA1Q969W9 287 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 TESCQ96BS2 214 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 REPS1Q96D71 796 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 KCTD7Q96MP8 289 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 PIP5K1AQ99755 562 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 DPCDQ9BVM2 203 aaPredicted RBP10.82□□□□□ -0.68
LDLR-208ENST00000558518 MKRN2Q9H000 416 aaKnown RBP10.82□□□□□ -0.68
LDLR-208ENST00000558518 KCNK12Q9HB15 430 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ACER3Q9NUN7 267 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 PLAGL1Q9UM63 463 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 STUB1Q9UNE7 303 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 PCDHGB2Q9Y5G2 931 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 CDH23Q9H251 3354 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ATF6P18850 670 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 BUD31P41223 144 aaPredicted RBP10.82□□□□□ -0.68
LDLR-208ENST00000558518 ZNF791Q3KP31 576 aaPredicted RBP10.82□□□□□ -0.68
LDLR-208ENST00000558518 MARCH9Q86YJ5 346 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 AUTS2Q8WXX7 1259 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 TMEM159Q96B96 161 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 C1QTNF6Q9BXI9 259 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 MTG2Q9H4K7 406 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 SLA2Q9H6Q3 261 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ZC4H2Q9NQZ6 224 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 LHX3Q9UBR4 397 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 KLK4Q9Y5K2 254 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ANKRD36A6QL64 1941 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 WASHC1A8K0Z3 465 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 INMT-MINDY4F8WBC2 141 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 PRRG1O14668 218 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 GCM2O75603 506 aaPredicted RBP10.82□□□□□ -0.68
LDLR-208ENST00000558518 FCER2P06734 321 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 NR2F6P10588 404 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 TLE2Q04725 743 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 CNTN1Q12860 1018 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 GINS1Q14691 196 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 TRIM40Q6P9F5 258 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 AGTRAPQ6RW13 159 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 RRM2BQ7LG56 351 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 PEX5LQ8IYB4 626 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 FAM109AQ8N4B1 249 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 SIMC1Q8NDZ2 872 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 ZFP3Q96NJ6 502 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 NRTNQ99748 197 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 TMEM245Q9H330 911 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 MYO16Q9Y6X6 1858 aa10.82□□□□□ -0.68
LDLR-208ENST00000558518 A0A1W2PRB8 838 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 GLOD5A6NK44 160 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 GAPDHSO14556 408 aaPredicted RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 HRO43593 1189 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 SLC28A2O43868 658 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 CD79BP40259 229 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 SLX4IPQ5VYV7 408 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MZT2BQ6NZ67 158 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 Q6ZVL8 140 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 HTATIP2Q9BUP3 242 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 GABARAPL3Q9BY60 117 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MRPL15Q9P015 296 aaKnown RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 CXXC1Q9P0U4 656 aaPredicted RBP10.81□□□□□ -0.68
LDLR-208ENST00000558518 SEC14L4Q9UDX3 406 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 SEC14L3Q9UDX4 400 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MYOFQ9NZM1 2061 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 TEX28O15482 410 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 FABP7O15540 132 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 TSPAN9O75954 239 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 CD160O95971 181 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 F11P03951 625 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 AKR1A1P14550 325 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 SERPINA4P29622 427 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 ETV5P41161 510 aa10.81□□□□□ -0.68
LDLR-208ENST00000558518 MRPL19P49406 292 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms