RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TSPAN8P19075 237 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 CMPK1P30085 196 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 SMSP52788 366 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 PNLIPRP1P54315 467 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 PKNOX1P55347 436 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 MFAP5Q13361 173 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 WLSQ5T9L3 541 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 TMEM198Q66K66 360 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 CLEC6AQ6EIG7 209 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 FAAH2Q6GMR7 532 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 RHBDD2Q6NTF9 364 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 METTL2BQ6P1Q9 378 aaKnown RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 FBXO42Q6P3S6 717 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 KIRREL2Q6UWL6 708 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 SBSNQ6UWP8 590 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 ISLR2Q6UXK2 745 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 NEK10Q6ZWH5 1172 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 FRA10AC1Q70Z53 315 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 UBE2R2Q712K3 238 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 Q71RC1 249 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 HOMEZQ8IX15 550 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 OR4N4Q8N0Y3 316 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 HMGCLL1Q8TB92 370 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 TRPC4APQ8TEL6 797 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 TWIST2Q8WVJ9 160 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 WDR60Q8WVS4 1066 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 NSUN5Q96P11 429 aaKnown RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 FOXC2Q99958 501 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 MESP1Q9BRJ9 268 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 DPH7Q9BTV6 452 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 LHPPQ9H008 270 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 MRPS30Q9NP92 439 aaKnown RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 PFDN4Q9NQP4 134 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 PLA2G3Q9NZ20 509 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 SPATA7Q9P0W8 599 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 IFT80Q9P2H3 777 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 OARD1Q9Y530 152 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 DNAJC15Q9Y5T4 150 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 JMJD1CQ15652 2540 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 FLNAP21333 2647 aaKnown RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 GFYI3L273 518 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 SLC19A2O60779 497 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 PSMG1O95456 288 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 SLC16A8O95907 504 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ENO3P13929 434 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 MMP11P24347 488 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 GCKP35557 465 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 HSD17B2P37059 387 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 CCNG1P51959 295 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ACTR3P61158 418 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 PPP1R3AQ16821 1122 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 NKAIN1Q4KMZ8 207 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 CDKL4Q5MAI5 379 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 THEMIS2Q5TEJ8 643 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 FRMPD2BQ6IN97 320 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 DEFB107AQ8IZN7 70 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 METTL27Q8N6F8 245 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 UBTD2Q8WUN7 234 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ZNF480Q8WV37 535 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 STMN2Q93045 179 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 THOC3Q96J01 351 aaKnown RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 LMF1Q96S06 567 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ZNF382Q96SR6 550 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 CCT7Q99832 543 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 SMR3AQ99954 134 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 C17orf62Q9BQA9 187 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 EFCAB1Q9HAE3 211 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 SEMA4BQ9NPR2 832 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 CUTCQ9NTM9 273 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 UTP6Q9NYH9 597 aaKnown RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ABI3Q9P2A4 366 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 TAC3Q9UHF0 121 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 ADAMTS6Q9UKP5 1117 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 L3MBTL1Q9Y468 752 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 HS3ST3B1Q9Y662 390 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 NSD1Q96L73 2696 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-230ENST00000557427 RTTNQ86VV8 2226 aa11.78□□□□□ -0.52
SHMT2-230ENST00000557427 CSPG4Q6UVK1 2322 aa11.77□□□□□ -0.52
SHMT2-230ENST00000557427 FN1P02751 2386 aaKnown RBP11.77□□□□□ -0.52
SHMT2-230ENST00000557427 ZNF839A8K0R7 811 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 E7ENX8 843 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 PSMD12O00232 456 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-230ENST00000557427 PPP6CO00743 305 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 PIP5K1BO14986 540 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 SRPX2O60687 465 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-230ENST00000557427 FKBP9O95302 570 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 CHEK2O96017 543 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 UROSP10746 265 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 GNAZP19086 355 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 OR1D4P47884 311 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 MRPL19P49406 292 aaKnown RBP11.77□□□□□ -0.53
SHMT2-230ENST00000557427 AGTR2P50052 363 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 NUDT2P50583 147 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 TNFSF10P50591 281 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 ARSFP54793 590 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 TAP2Q03519 686 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 TBL3Q12788 808 aaKnown RBP11.77□□□□□ -0.53
SHMT2-230ENST00000557427 STX5Q13190 355 aa11.77□□□□□ -0.53
SHMT2-230ENST00000557427 GRM7Q14831 915 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms