RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 SYNGR4O95473 234 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 GNSP15586 552 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 GIFP27352 417 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 TNFRSF4P43489 277 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 MTTPP55157 894 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 HSD17B7P56937 341 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 CDKL1Q00532 357 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 DMTNQ08495 405 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 KLHL30Q0D2K2 578 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 DRP2Q13474 957 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 EFTUD2Q15029 972 aaKnown RBP eCLIP3.78□□□□□ -1.8
PRPF39-210ENST00000556718 RBBP5Q15291 538 aaKnown RBP3.78□□□□□ -1.8
PRPF39-210ENST00000556718 CMPK2Q5EBM0 449 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 C1orf189Q5VU69 101 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 RTL6Q6ICC9 239 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 ZCCHC12Q6PEW1 402 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 AFTPHQ6ULP2 937 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 ABRAXAS1Q6UWZ7 409 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 MCM10Q7L590 875 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 C17orf64Q86WR6 236 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 CIARTQ8N365 385 aaPredicted RBP3.78□□□□□ -1.8
PRPF39-210ENST00000556718 LRRC17Q8N6Y2 441 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 COLGALT1Q8NBJ5 622 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 OR5AP2Q8NGF4 316 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 OR6S1Q8NH40 331 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 MAPK15Q8TD08 544 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 GATAD1Q8WUU5 269 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 SMPDL3AQ92484 453 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 UHRF2Q96PU4 802 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 AGPAT1Q99943 283 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 FUCA2Q9BTY2 467 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 NMNAT2Q9BZQ4 307 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 SIRPDQ9H106 197 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 ATP13A3Q9H7F0 1226 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 SLC52A3Q9NQ40 469 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 RRAGDQ9NQL2 400 aaPredicted RBP3.78□□□□□ -1.8
PRPF39-210ENST00000556718 WDR37Q9Y2I8 494 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 OR1A2Q9Y585 309 aa3.78□□□□□ -1.8
PRPF39-210ENST00000556718 DHX57Q6P158 1386 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 DISP3Q9P2K9 1392 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 YJEFN3A6XGL0 299 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 KPNA7A9QM74 516 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 DYNC1I1O14576 645 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 SURF4O15260 269 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 PEX11AO75192 247 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 FGF19O95750 216 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 PTBP3O95758 552 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 PROS1P07225 676 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 CFC1BP0CG36 223 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 CFC1P0CG37 223 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 ERVK-10P10266 1014 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 FCARP24071 287 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 MSNP26038 577 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 HLA-FP30511 346 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 AKT2P31751 481 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 OR1D2P34982 312 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 FEN1P39748 380 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 PRPHP41219 470 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 TSFMP43897 325 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 ACADSBP45954 432 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 PAX9P55771 341 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 ABCE1P61221 599 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 GUCY2DQ02846 1103 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 SPP2Q13103 211 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 SNX1Q13596 522 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 BTG3Q14201 252 aaPredicted RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 MEF2DQ14814 521 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 CEBPEQ15744 281 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 TAB1Q15750 504 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 C3AR1Q16581 482 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 SGSM1Q2NKQ1 1148 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 RFTN2Q52LD8 501 aaPredicted RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 ARSKQ6UWY0 536 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 CWC27Q6UX04 472 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 HOGA1Q86XE5 327 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 LACC1Q8IV20 430 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 RNF148Q8N7C7 305 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 FAM71CQ8NEG0 241 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 OR4L1Q8NH43 312 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 MRPL38Q96DV4 380 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 MAGED4Q96JG8 741 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 PGLYRP2Q96PD5 576 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 SLC26A1Q9H2B4 701 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 CHMP4BQ9H444 224 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 SLC35D1Q9NTN3 355 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 MED17Q9NVC6 651 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 CNOT2Q9NZN8 540 aaKnown RBP3.77□□□□□ -1.81
PRPF39-210ENST00000556718 BCAP29Q9UHQ4 241 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 U3KQV3 271 aa3.77□□□□□ -1.81
PRPF39-210ENST00000556718 A0A0U1RRA0 63 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 MSGN1A6NI15 193 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 PMS2P5A8MQ11 134 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 ARPC1BO15143 372 aaKnown RBP3.76□□□□□ -1.81
PRPF39-210ENST00000556718 CLDN3O15551 220 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 B4GAT1O43505 415 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 NADKO95544 446 aaPredicted RBP3.76□□□□□ -1.81
PRPF39-210ENST00000556718 TXNDC12O95881 172 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 MBL2P11226 248 aaPredicted RBP3.76□□□□□ -1.81
PRPF39-210ENST00000556718 C4BPBP20851 252 aa3.76□□□□□ -1.81
PRPF39-210ENST00000556718 SOX3P41225 446 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms