RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 GTF3AQ92664 365 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ISG20Q96AZ6 181 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NARS2Q96I59 477 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ZNF514Q96K75 400 aaPredicted RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 FOPNLQ96NB1 174 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CLUHP3Q96NS8 147 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CDC6Q99741 560 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 PKP2Q99959 881 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 TMEM246Q9BRR3 403 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 HTATIP2Q9BUP3 242 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ROGDIQ9GZN7 287 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 RACGAP1Q9H0H5 632 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 LINC00597Q9H2U6 94 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 TRIT1Q9H3H1 467 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NOL11Q9H8H0 719 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 IL23AQ9NPF7 189 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NIT2Q9NQR4 276 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 AIG1Q9NVV5 245 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NUDT4Q9NZJ9 180 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ADA2Q9NZK5 511 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 KLHL20Q9Y2M5 609 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CCL27Q9Y4X3 112 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NEUROG3Q9Y4Z2 214 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 DOCK9Q9BZ29 2069 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CEP290O15078 2479 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 IGLV3-16A0A075B6K0 115 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 A0A0A6YYJ9 748 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 TCRBV3S1A0A5B6 114 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 XKRY2A2RUG3 117 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 OR5K3A6NET4 321 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NEDD8-MDP1E9PL57 170 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NR5A2O00482 541 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CLDN4O14493 209 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 GLUD1P00367 558 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 C1SP09871 688 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CDH1P12830 882 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 SLC6A2P23975 617 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 IRS1P35568 1242 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 SLC1A3P43003 542 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ALDH3A2P51648 485 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ELP6Q0PNE2 266 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ADGRE1Q14246 886 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ZNF77Q15935 545 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 KIF19Q2TAC6 998 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ZNF829Q3KNS6 432 aaPredicted RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 PRSS36Q5K4E3 855 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 C6orf136Q5SQH8 315 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 PLPP4Q5VZY2 271 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ZDHHC20Q5W0Z9 365 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 RPUSD3Q6P087 351 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 KLHL24Q6TFL4 600 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 TPRG1Q6ZUI0 275 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 GPRIN3Q6ZVF9 776 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 Q6ZVU0 165 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 MIER2Q8N344 545 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 OR2A12Q8NGT7 310 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 PROKR1Q8TCW9 393 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 NUDT8Q8WV74 236 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 TTC9Q92623 222 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ROPN1LQ96C74 230 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 ZSWIM3Q96MP5 696 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 IFT27Q9BW83 186 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 CPEB1Q9BZB8 566 aaKnown RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 COPS7BQ9H9Q2 264 aaPredicted RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 LATS2Q9NRM7 1088 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 SOHLH2Q9NX45 425 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 H2AFY2Q9P0M6 372 aaPredicted RBP4.88□□□□□ -1.63
TMEM260-210ENST00000556422 SLAMF8Q9P0V8 285 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 LRFN1Q9P244 771 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 LIMD1Q9UGP4 676 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 GNPTGQ9UJJ9 305 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 COPS3Q9UNS2 423 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 OARD1Q9Y530 152 aa4.88□□□□□ -1.63
TMEM260-210ENST00000556422 SMIM30A4D0T7 59 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 BBIP1A8MTZ0 92 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 ANKRD28O15084 1053 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 MED6O75586 246 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 KCNK5O95279 499 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 HRGP04196 525 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 EPORP19235 508 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 PTNP21246 168 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 ATP6V1B2P21281 511 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 GDF5P43026 501 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 GRK6P43250 576 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 METAP1P53582 386 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 UFM1P61960 85 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 SNRPD1P62314 119 aaKnown RBP4.87□□□□□ -1.63
TMEM260-210ENST00000556422 VAMP2P63027 116 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 PSPHP78330 225 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 NTHL1P78549 312 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 RHDQ02161 417 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 FOXO1Q12778 655 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 PLCL1Q15111 1095 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 PAN3Q58A45 887 aaKnown RBP4.87□□□□□ -1.63
TMEM260-210ENST00000556422 PAGE3Q5JUK9 113 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 ZFP1Q6P2D0 407 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 MBOAT1Q6ZNC8 495 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 SPATC1Q76KD6 591 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 SFRP1Q8N474 314 aa4.87□□□□□ -1.63
TMEM260-210ENST00000556422 CPEB3Q8NE35 698 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms