RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 SH2D2AQ9NP31 389 aa8.37□□□□□ -1.07
SYNE2-209ENST00000553308 HOMER3Q9NSC5 361 aa8.37□□□□□ -1.07
SYNE2-209ENST00000553308 VTI1BQ9UEU0 232 aa8.37□□□□□ -1.07
SYNE2-209ENST00000553308 DAPP1Q9UN19 280 aa8.37□□□□□ -1.07
SYNE2-209ENST00000553308 HRNRQ86YZ3 2850 aaPredicted RBP8.37□□□□□ -1.07
SYNE2-209ENST00000553308 KIAA1549Q9HCM3 1950 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 A0A088AWK7 358 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 TUBAL3A6NHL2 446 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 KIAA1324LA8MWY0 1029 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 CTNSO60931 367 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 WDR47O94967 919 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 LRATO95237 230 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 HEXAP06865 529 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 C1GALT1C1LP0DN25 315 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 TNNI3P19429 210 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF10P21506 573 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 CEACAM8P31997 349 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 GDF5P43026 501 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF136P52737 540 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 MTTPP55157 894 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 DCAF7P61962 342 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 KCNJ2P63252 427 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 STX4Q12846 297 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 PCBP2Q15366 365 aaKnown RBP eCLIP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF791Q3KP31 576 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ADPRMQ3LIE5 342 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ACSF3Q4G176 576 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 SLC22A10Q63ZE4 541 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 TRIM40Q6P9F5 258 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 POMZP3Q6PJE2 187 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 LYPD8Q6UX82 237 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 TMIGD1Q6UXZ0 262 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 C9orf40Q8IXQ3 194 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 TTLQ8NG68 377 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 OR2L5Q8NG80 312 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 OR5L2Q8NGL0 311 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 LINC01560Q8TB33 94 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF721Q8TF20 911 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 MAGOHBQ96A72 148 aaKnown RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 KIAA1191Q96A73 305 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 LRRC46Q96FV0 321 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 JSRP1Q96MG2 331 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 SERINC2Q96SA4 455 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 MDFIQ99750 246 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 EGFL8Q99944 293 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 REXO4Q9GZR2 422 aaKnown RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 RBSNQ9H1K0 784 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 COPS7BQ9H9Q2 264 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 PROK2Q9HC23 129 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 ZFP64Q9NPA5 681 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 MTRF1LQ9UGC7 380 aaKnown RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 BOKQ9UMX3 212 aaPredicted RBP8.36□□□□□ -1.07
SYNE2-209ENST00000553308 PCDHGB3Q9Y5G1 929 aa8.36□□□□□ -1.07
SYNE2-209ENST00000553308 FN1P02751 2386 aaKnown RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 C15orf38-AP3S2A0A0A6YYH1 394 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 A0A1W2PPR1 153 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SYNDIG1LA6NDD5 238 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 CLCA1A8K7I4 914 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 PRAMEF4O60810 478 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 H2AFYO75367 372 aaKnown RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 CLEC3AO75596 197 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 EPPINO95925 133 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 EPXP11678 715 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF37AP17032 561 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 GNAZP19086 355 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 CD53P19397 219 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SLC6A12P48065 614 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 AGFG1P52594 562 aaKnown RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 NKX6-1P78426 367 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 CRYZQ08257 329 aaKnown RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 DUSP8Q13202 625 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SERTAD2Q14140 314 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF460Q14592 562 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 EFTUD2Q15029 972 aaKnown RBP eCLIP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 POU4F3Q15319 338 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 MPEG1Q2M385 716 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 MSS51Q4VC12 460 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 PIGGQ5H8A4 983 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SPANXN3Q5MJ09 141 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 RNASEH2BQ5TBB1 312 aaKnown RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 PRAMEF9Q5VWM5 478 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 FAM45BPQ6NSW5 357 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ABHD17CQ6PCB6 329 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ZNF793Q6ZN11 406 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 GALNT7Q86SF2 657 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 LACC1Q8IV20 430 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 IGDCC3Q8IVU1 814 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 LRRC25Q8N386 305 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 VWA5B2Q8N398 1253 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 LIX1Q8N485 282 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SPC24Q8NBT2 197 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 OR10G3Q8NGC4 313 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 GABPB2Q8TAK5 448 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 NUBPLQ8TB37 319 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SLC22A8Q8TCC7 542 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 FAM45AQ8TCE6 357 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 PAQR8Q8TEZ7 354 aa8.35□□□□□ -1.07
SYNE2-209ENST00000553308 ANKRD9Q96BM1 317 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 SPACA9Q96E40 222 aaPredicted RBP8.35□□□□□ -1.07
SYNE2-209ENST00000553308 CERS2Q96G23 380 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms