RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CHTF18Q8WVB6 975 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 UCN3Q969E3 161 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 APIPQ96GX9 242 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 LPAR4Q99677 370 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 LHPPQ9H008 270 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 ZNF552Q9H707 407 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-226ENST00000553011 TEX10Q9NXF1 929 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-226ENST00000553011 MS4A12Q9NXJ0 267 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 PTGDR2Q9Y5Y4 395 aa13.23□□□□□ -0.29
PTCH1-226ENST00000553011 SERTM1A2A2V5 107 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 GLOD5A6NK44 160 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 EIF4E1BA6NMX2 242 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 BIRC5O15392 142 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 FGF17O60258 216 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 LYPLA1O75608 230 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 AIFM1O95831 613 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 NR2F6P10588 404 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 ITGAMP11215 1152 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 BUD31P41223 144 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 WDR4P57081 412 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 SLC26A5P58743 744 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 BTKQ06187 659 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 NFATC3Q12968 1075 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 CHI3L2Q15782 390 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 BTBD16Q32M84 506 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 VWA5B1Q5TIE3 1220 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 IRAK1BP1Q5VVH5 260 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 KANK2Q63ZY3 851 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 PLAG1Q6DJT9 500 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 ASB18Q6ZVZ8 466 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 OR4N5Q8IXE1 308 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 AGR3Q8TD06 166 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 MGARPQ8TDB4 240 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 BRIX1Q8TDN6 353 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 ANKRD9Q96BM1 317 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 SMAD5Q99717 465 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 PAIP2Q9BPZ3 127 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 ALOXE3Q9BYJ1 711 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 TUBB1Q9H4B7 451 aa13.22□□□□□ -0.29
PTCH1-226ENST00000553011 RPF2Q9H7B2 306 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 ZNF395Q9H8N7 513 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 EML4Q9HC35 981 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 PNO1Q9NRX1 252 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 G3BP2Q9UN86 482 aaKnown RBP13.22□□□□□ -0.29
PTCH1-226ENST00000553011 ARHGAP10A1A4S6 786 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 SAGE2PA6NJ88 616 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 ITM2AO43736 263 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 SERPINE1P05121 402 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 BGNP21810 368 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 TLX1P31314 330 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-226ENST00000553011 SERPINB5P36952 375 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 MAPK12P53778 367 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 RAE1P78406 368 aaKnown RBP13.21□□□□□ -0.29
PTCH1-226ENST00000553011 ACSM2AQ08AH3 577 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 STX4Q12846 297 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 IMPG1Q17R60 797 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 TTMPQ5BVD1 217 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 COLEC12Q5KU26 742 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 SH2D4BQ5SQS7 431 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 HHATQ5VTY9 493 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 ACSM2BQ68CK6 577 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 RIPOR1Q6ZS17 1223 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 TRIM46Q7Z4K8 759 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 PTRH1Q86Y79 214 aaKnown RBP13.21□□□□□ -0.29
PTCH1-226ENST00000553011 MMP21Q8N119 569 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 SIRT6Q8N6T7 355 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 PSMF1Q92530 271 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 VIPAS39Q9H9C1 493 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 ZBTB20Q9HC78 741 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-226ENST00000553011 ZNF451Q9Y4E5 1061 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 TRAF6Q9Y4K3 522 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 CCL27Q9Y4X3 112 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 DNAJC15Q9Y5T4 150 aa13.21□□□□□ -0.29
PTCH1-226ENST00000553011 FASNP49327 2511 aaKnown RBP13.2□□□□□ -0.3
PTCH1-226ENST00000553011 SVILO95425 2214 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 BLACEA4D250 179 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 PGRMC2O15173 223 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 PCDH7O60245 1069 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 SASH3O75995 380 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 MYO1DO94832 1006 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 HSPA4LO95757 839 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 IFNA16P05015 189 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 FGF4P08620 206 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 NEFHP12036 1026 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 ICAM2P13598 275 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 IGLV3-21P80748 117 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-226ENST00000553011 FOLH1Q04609 750 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 EXT1Q16394 746 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 UGT3A2Q3SY77 523 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 SPIN4Q56A73 249 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 SPDYAQ5MJ70 313 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 NDUFAF5Q5TEU4 345 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 AGAP7PQ5VUJ5 663 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 B3GNTL1Q67FW5 361 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-226ENST00000553011 CLYBLQ8N0X4 340 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 ZNF843Q8N446 348 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 KIF2BQ8N4N8 673 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 NFAM1Q8NET5 270 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-226ENST00000553011 M1APQ8TC57 530 aa13.2□□□□□ -0.3
PTCH1-226ENST00000553011 TWIST2Q8WVJ9 160 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms