RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 TSNAXIP1Q2TAA8 658 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 NXPE4Q6UWF7 544 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 GPALPP1Q8IXQ4 340 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 DMRTC2Q8IXT2 367 aaPredicted RBP11.02□□□□□ -0.65
CKAP4-202ENST00000552828 TMEM156Q8N614 296 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 PDPRQ8NCN5 879 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 OR52N2Q8NGI0 321 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 EXT2Q93063 718 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 CAVIN3Q969G5 261 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 GPR78Q96P69 363 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 ATOH8Q96SQ7 321 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 AIF1LQ9BQI0 150 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 NPLQ9BXD5 320 aaPredicted RBP11.02□□□□□ -0.65
CKAP4-202ENST00000552828 TIMMDC1Q9NPL8 285 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 NUDT4Q9NZJ9 180 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 TBK1Q9UHD2 729 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 RAB21Q9UL25 225 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 RNF6Q9Y252 685 aa11.02□□□□□ -0.65
CKAP4-202ENST00000552828 YARS2Q9Y2Z4 477 aaKnown RBP11.02□□□□□ -0.65
CKAP4-202ENST00000552828 MED13LQ71F56 2210 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 TMEM200CA6NKL6 621 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 A8MUA0 341 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 TAPBPO15533 448 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 STK16O75716 305 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 MYO1DO94832 1006 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 WDR47O94967 919 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 HOXD4P09016 255 aaPredicted RBP11.01□□□□□ -0.65
CKAP4-202ENST00000552828 CD1EP15812 388 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 HNF4AP41235 474 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 GDF5P43026 501 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 SLC6A12P48065 614 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 SSR4P51571 173 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 HSD17B7P56937 341 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 C18orf21Q32NC0 220 aaPredicted RBP11.01□□□□□ -0.65
CKAP4-202ENST00000552828 RGS9BPQ6ZS82 235 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 ACAD11Q709F0 780 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 TDRPQ86YL5 185 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 KLHDC8AQ8IYD2 350 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 PLD6Q8N2A8 252 aaKnown RBP11.01□□□□□ -0.65
CKAP4-202ENST00000552828 RND1Q92730 232 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 VMP1Q96GC9 406 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 SCYL1Q96KG9 808 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 CAPS2Q9BXY5 557 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 UCK2Q9BZX2 261 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 RHBGQ9H310 441 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 ZDHHC11Q9H8X9 412 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 KCNJ16Q9NPI9 418 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 DEPPQ9NTK1 212 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 KCNN3Q9UGI6 736 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 PTBP2Q9UKA9 531 aaKnown RBP11.01□□□□□ -0.65
CKAP4-202ENST00000552828 FBXW2Q9UKT8 454 aa11.01□□□□□ -0.65
CKAP4-202ENST00000552828 NKX2-6A6NCS4 301 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 LRIT2A6NDA9 550 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 SYNDIG1LA6NDD5 238 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 TGFBR3LH3BV60 316 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 UBXN8O00124 270 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 PRKNO60260 465 aaPredicted RBP11□□□□□ -0.65
CKAP4-202ENST00000552828 CDC40O60508 579 aaKnown RBP eCLIP11□□□□□ -0.65
CKAP4-202ENST00000552828 CDH16O75309 829 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 ZFAND5O76080 213 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 GLSO94925 669 aaPredicted RBP11□□□□□ -0.65
CKAP4-202ENST00000552828 NUDT17P0C025 328 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 GFAPP14136 432 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 GNAZP19086 355 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 SLCO1A2P46721 670 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 HSPA7P48741 367 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 NR0B1P51843 470 aaKnown RBP11□□□□□ -0.65
CKAP4-202ENST00000552828 GPR85P60893 370 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 STXBP1P61764 594 aaKnown RBP11□□□□□ -0.65
CKAP4-202ENST00000552828 IFFO1Q0D2I5 559 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 PMPCAQ10713 525 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 RUNX2Q13950 521 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 RASA2Q15283 850 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 RBBP5Q15291 538 aaKnown RBP11□□□□□ -0.65
CKAP4-202ENST00000552828 XKR6Q5GH73 641 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 PAOXQ6QHF9 649 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 LCA5Q86VQ0 697 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 RPRMLQ8N4K4 120 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 PSD4Q8NDX1 1056 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 ACMSDQ8TDX5 336 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 NCLNQ969V3 563 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 GAL3ST3Q96A11 431 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 MS4A6EQ96DS6 147 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 SEC16BQ96JE7 1060 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 TMEM79Q9BSE2 394 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 CD244Q9BZW8 370 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 SLC24A3Q9HC58 644 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 DNAJC11Q9NVH1 559 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 ZNF358Q9NW07 568 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 FAM53CQ9NYF3 392 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 GPRC5BQ9NZH0 403 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 KCMF1Q9P0J7 381 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 MYOTQ9UBF9 498 aa11□□□□□ -0.65
CKAP4-202ENST00000552828 TLDC2A0PJX2 215 aa10.99□□□□□ -0.65
CKAP4-202ENST00000552828 PINLYPA6NC86 204 aa10.99□□□□□ -0.65
CKAP4-202ENST00000552828 OR14I1A6ND48 311 aa10.99□□□□□ -0.65
CKAP4-202ENST00000552828 SMIM23A6NLE4 172 aa10.99□□□□□ -0.65
CKAP4-202ENST00000552828 CLDN4O14493 209 aa10.99□□□□□ -0.65
CKAP4-202ENST00000552828 CLGNO14967 610 aa10.99□□□□□ -0.65
CKAP4-202ENST00000552828 CCNT2O60583 730 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms