RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 MDGA2Q7Z553 956 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 CMC1Q7Z7K0 106 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 ISCA2Q86U28 154 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 CD163Q86VB7 1156 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 SLC22A16Q86VW1 577 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 GOLM1Q8NBJ4 401 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 OR7G3Q8NG95 312 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 RHEBL1Q8TAI7 183 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 SLC2A12Q8TD20 617 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 FBF1Q8TES7 1133 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 PTPMT1Q8WUK0 201 aaPredicted RBP12.19□□□□□ -0.46
RTN3-213ENST00000543552 RGMAQ96B86 450 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 ART5Q96L15 291 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 SGCZQ96LD1 299 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 RASL10BQ96S79 203 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 DMRTA2Q96SC8 542 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 ATOH8Q96SQ7 321 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 TP63Q9H3D4 680 aaPredicted RBP12.19□□□□□ -0.46
RTN3-213ENST00000543552 PCDHGA11Q9Y5H2 935 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 FBN2P35556 2912 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 CSMD2Q7Z408 3487 aa12.19□□□□□ -0.46
RTN3-213ENST00000543552 A0A1B0GTH9 108 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 UBXN8O00124 270 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 WWP2O00308 870 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 OR6B1O95007 311 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 TGFB1P01137 390 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 C1QAP02745 245 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 SNRPB2P08579 225 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 GFAPP14136 432 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 PHBP35232 272 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 BUD31P41223 144 aaPredicted RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 SOX3P41225 446 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 HK2P52789 917 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 ETF1P62495 437 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 RNF4P78317 190 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 PLIN5Q00G26 463 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 CKAP4Q07065 602 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 TBL3Q12788 808 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 DEPDC1Q5TB30 811 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 OR4C11Q6IEV9 310 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 IL20RBQ6UXL0 311 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 ZNF793Q6ZN11 406 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 MYLK4Q86YV6 388 aaPredicted RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 CHERPQ8IWX8 916 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 OR2M7Q8NG81 312 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 ASB5Q8WWX0 329 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 TANKQ92844 425 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 SDCCAG3Q96C92 435 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 DGAT2Q96PD7 388 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 MAPKAP1Q9BPZ7 522 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 SPOCK3Q9BQ16 436 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 FAM173AQ9BQD7 235 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 PELOQ9BRX2 385 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 ACTR8Q9H981 624 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 PLSCR2Q9NRY7 297 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 IGSF5Q9NSI5 407 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 TSC22D4Q9Y3Q8 395 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 TNPO3Q9Y5L0 923 aaKnown RBP12.18□□□□□ -0.46
RTN3-213ENST00000543552 PKDREJQ9NTG1 2253 aa12.18□□□□□ -0.46
RTN3-213ENST00000543552 GTF3C1Q12789 2109 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 TMEM200CA6NKL6 621 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 RTCAO00442 366 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 PRKNO60260 465 aaPredicted RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 UGDHO60701 494 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 LDB3O75112 727 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 FAM155BO75949 473 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 P04436 131 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 PTX3P26022 381 aaPredicted RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 STT3AP46977 705 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 SERPINB8P50452 374 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 ALDH18A1P54886 795 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 PPIAP62937 165 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 SLAMF1Q13291 335 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 DDX39BQ13838 428 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 SETDB1Q15047 1291 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 MPEG1Q2M385 716 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 LIPJQ5W064 366 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 C8orf74Q6P047 294 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 METTL2BQ6P1Q9 378 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 C3P1Q6ZMU1 363 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 FGD2Q7Z6J4 655 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 UBE3DQ7Z6J8 389 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 GPR180Q86V85 440 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 DND1Q8IYX4 353 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 ZCCHC7Q8N3Z6 543 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 TEX9Q8N6V9 391 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 HUS1BQ8NHY5 278 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 SLC22A8Q8TCC7 542 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 CHTF18Q8WVB6 975 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 RBM18Q96H35 190 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 TRIM8Q9BZR9 551 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 RPF2Q9H7B2 306 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 DMRT3Q9NQL9 472 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 SACM1LQ9NTJ5 587 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 LYARQ9NX58 379 aaKnown RBP12.17□□□□□ -0.46
RTN3-213ENST00000543552 CACNA1CQ13936 2221 aa12.17□□□□□ -0.46
RTN3-213ENST00000543552 OR14I1A6ND48 311 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 FIGNL2A6NMB9 653 aa12.16□□□□□ -0.46
RTN3-213ENST00000543552 SAP18O00422 153 aaKnown RBP12.16□□□□□ -0.46
RTN3-213ENST00000543552 ADAM10O14672 748 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms