RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SRP14P37108 136 aaKnown RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 NUDT6P53370 316 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 TEX35Q5T0J7 233 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 PRAMEF20Q5VT98 475 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 DNM1P46Q6ZS02 220 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 MORN4Q8NDC4 146 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 LKAAEAR1Q8TD35 194 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 PAQR8Q8TEZ7 354 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 ADAD1Q96M93 576 aaKnown RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 UGT2B28Q9BY64 529 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 PCBD2Q9H0N5 130 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 FANCFQ9NPI8 374 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 UVRAGQ9P2Y5 699 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 RUVBL2Q9Y230 463 aaKnown RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 SLC6A5Q9Y345 797 aa8.37□□□□□ -1.07
USP28-205ENST00000537706 BZW2Q9Y6E2 419 aaKnown RBP8.37□□□□□ -1.07
USP28-205ENST00000537706 CCDC162PA2VCL2 907 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 LRRC3CA6NJW4 275 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 NDUFS4O43181 175 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 CEP104O60308 925 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 C1QAP02745 245 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 TBXA2RP21731 343 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 PSMB4P28070 264 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 ATP5DP30049 168 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 CDK9P50750 372 aaKnown RBP8.36□□□□□ -1.07
USP28-205ENST00000537706 PWP1Q13610 501 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 FGFBP1Q14512 234 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 POU6F1Q14863 301 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 SLC18A3Q16572 532 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 OR2A2Q6IF42 318 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 ENPP6Q6UWR7 440 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 LRRC6Q86X45 466 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 GRAMD2AQ8IUY3 354 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 GCNT2Q8N0V5 402 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 AFAP1L2Q8N4X5 818 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 SLC15A4Q8N697 577 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 MFSD9Q8NBP5 474 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 SLC44A1Q8WWI5 657 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 PGM2Q96G03 612 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 PLPPR2Q96GM1 343 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 CCDC138Q96M89 665 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 PRTFDC1Q9NRG1 225 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 DNAJC11Q9NVH1 559 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 ARMCX1Q9P291 453 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 COPS7AQ9UBW8 275 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 TSR3Q9UJK0 312 aaKnown RBP8.36□□□□□ -1.07
USP28-205ENST00000537706 TFR2Q9UP52 801 aa8.36□□□□□ -1.07
USP28-205ENST00000537706 MRPS33Q9Y291 106 aaKnown RBP8.36□□□□□ -1.07
USP28-205ENST00000537706 IGHV4-30-2A0A087WSY4 118 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 LOC100289279A0A1B0GTE1 492 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 A0A1W2PNV4 684 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 MACROD2A1Z1Q3 448 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CTAGE15A4D2H0 777 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 H7C0C1 242 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 OR10H2O60403 315 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CST8O60676 142 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ABCB7O75027 752 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ACSL3O95573 720 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SYF2O95926 243 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 SERPIND1P05546 499 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 HPNP05981 417 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CTAGE8P0CG41 777 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 IGHV4-31P0DP07 118 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 MAGEA1P43355 309 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ATP5OP48047 213 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 MASP1P48740 699 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 LSM11P83369 360 aaKnown RBP eCLIP8.35□□□□□ -1.076e-18■■■■■ 77.1
USP28-205ENST00000537706 CKAP4Q07065 602 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 FAPQ12884 760 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SLC13A2Q13183 592 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ELAVL1Q15717 326 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 MPEG1Q2M385 716 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CTAGE6Q86UF2 777 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CTAGE4Q8IX94 777 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CNEP1R1Q8N9A8 125 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 PPFIBP2Q8ND30 876 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ZNF740Q8NDX6 193 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 FAM13CQ8NE31 585 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 OR14A16Q8NHC5 309 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SMAP2Q8WU79 429 aaPredicted RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 PKP4Q99569 1192 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 KLHL4Q9C0H6 718 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CCDC177Q9NQR7 707 aaPredicted RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 HOMER3Q9NSC5 361 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 JRKLQ9Y4A0 524 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SAR1BQ9Y6B6 198 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CUBNO60494 3623 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ELOA3DA6NLF2 546 aaPredicted RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 E7ENX8 843 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 GOT2P00505 430 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 TNNI3P19429 210 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SERPINB3P29508 390 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SLC6A12P48065 614 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 TTPAP49638 278 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 HSD17B7P56937 341 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 RNF4P78317 190 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 PRAMEP78395 509 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SPARCL1Q14515 664 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ELOA3BQ3SY89 546 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 PIGGQ5H8A4 983 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms