RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TMEM132CQ8N3T6 1108 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 OR4F6Q8NGB9 312 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 ACMSDQ8TDX5 336 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 THAP3Q8WTV1 239 aaPredicted RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 PTPMT1Q8WUK0 201 aaPredicted RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 SCMH1Q96GD3 660 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 PSMG3-AS1Q96PY0 264 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 FRG2BQ96QU4 278 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 DDX31Q9H8H2 851 aaKnown RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 KLHL1Q9NR64 748 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 ATG4BQ9Y4P1 393 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 DIDO1Q9BTC0 2240 aaKnown RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 CDK2AP1O14519 115 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 TMPRSS11DO60235 418 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 FGF17O60258 216 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 DLX3O60479 287 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 PRKRAO75569 313 aaKnown RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 PYGBP11216 843 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 TAC1P20366 129 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 MST1P26927 711 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 TRHRP34981 398 aaPredicted RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 HERVK_113P63132 956 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 IGLV3-21P80748 117 aaPredicted RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 TNFRSF17Q02223 184 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 UNC50Q53HI1 259 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 TTC19Q6DKK2 380 aaPredicted RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 LETMD1Q6P1Q0 360 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 ZNF227Q86WZ6 799 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 OR4N5Q8IXE1 308 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 DNAJB8Q8NHS0 232 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 SSC4DQ8WTU2 575 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 UBLCP1Q8WVY7 318 aaPredicted RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 DAZLQ92904 295 aaKnown RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 SERPINI1Q99574 410 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 CCDC77Q9BR77 488 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 ERVK-6Q9BXR3 956 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 RPF2Q9H7B2 306 aaKnown RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 TRIM45Q9H8W5 580 aaPredicted RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 MS4A12Q9NXJ0 267 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 LRFN1Q9P244 771 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 PHF11Q9UIL8 331 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 ERRFI1Q9UJM3 462 aaPredicted RBP13.78□□□□□ -0.2
USP28-204ENST00000537642 ZNF225Q9UK10 706 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 ASB4Q9Y574 426 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 CLCA3PQ9Y6N3 262 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 NBPF19A0A087WUL8 3843 aa13.78□□□□□ -0.2
USP28-204ENST00000537642 A0A1W2PPM1 405 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 TMEM200CA6NKL6 621 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 FOXO6A8MYZ6 492 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 FCHO1O14526 889 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 PROM1O43490 865 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 WISP2O76076 250 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 SEMA3DO95025 777 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 DDAH2O95865 285 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 OTCP00480 354 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 CRYABP02511 175 aaKnown RBP13.77□□□□□ -0.21
USP28-204ENST00000537642 SP1P08047 785 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 CD46P15529 392 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 HSD17B3P37058 310 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 CYB561P49447 251 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 HLCSP50747 726 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 CLCQ05315 142 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 ZNF678Q5SXM1 525 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 SLC25A25Q6KCM7 469 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 SH2D5Q6ZV89 423 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 HORMAD2Q8N7B1 307 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 ZNF321PQ8N8H1 164 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 MORN4Q8NDC4 146 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 OR14A16Q8NHC5 309 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 TRPC4APQ8TEL6 797 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 TANKQ92844 425 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 C5orf34Q96MH7 638 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 TMEM237Q96Q45 408 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 ANKZF1Q9H8Y5 726 aa13.77□□□□□ -0.21
USP28-204ENST00000537642 FARSBQ9NSD9 589 aaKnown RBP13.77□□□□□ -0.21
USP28-204ENST00000537642 LYARQ9NX58 379 aaKnown RBP13.77□□□□□ -0.21
USP28-204ENST00000537642 A0A1W2PR48 441 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 ASPDHA6ND91 283 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 WASHC1A8K0Z3 465 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 C17orf105B2RV13 164 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 ITGA10O75578 1167 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 SLC25A12O75746 678 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 ZFAND5O76080 213 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 OR4F21O95013 312 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 GBAP04062 536 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 GSTA1P08263 222 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 FAM58BPP0C7Q3 252 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 TNNI3P19429 210 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 ATP5F1P24539 256 aaPredicted RBP13.76□□□□□ -0.21
USP28-204ENST00000537642 TLX1P31314 330 aaPredicted RBP13.76□□□□□ -0.21
USP28-204ENST00000537642 BUD31P41223 144 aaPredicted RBP13.76□□□□□ -0.21
USP28-204ENST00000537642 SLCO1A2P46721 670 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 STT3AP46977 705 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 KCNK10P57789 538 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 FOLH1Q04609 750 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 IFT88Q13099 833 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 SGO1Q5FBB7 561 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 C10orf62Q5T681 223 aaPredicted RBP13.76□□□□□ -0.21
USP28-204ENST00000537642 CYP20A1Q6UW02 462 aa13.76□□□□□ -0.21
USP28-204ENST00000537642 C16orf47Q6ZP98 133 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms