RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SPNS1Q9H2V7 528 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 VCXQ9H320 206 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 ZNF768Q9H5H4 540 aaKnown RBP11.34□□□□□ -0.59
CLIP1-208ENST00000537004 EPHA6Q9UF33 1036 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 PCDHGA3Q9Y5H0 932 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 COLEC10Q9Y6Z7 277 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 STMND1H3BQB6 276 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 FOXE1O00358 373 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 BTN3A3O00478 584 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 POLR1CO15160 346 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ERGP11308 486 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 FOLR1P15328 257 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 GGT1P19440 569 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TMPRSS3P57727 454 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 C21orf58P58505 322 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 MRPS35P82673 323 aaKnown RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 MEF2AQ02078 507 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 FOLH1Q04609 750 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 MED21Q13503 144 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 LAPTM5Q13571 262 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 COL9A2Q14055 689 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ARHGAP19Q14CB8 494 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 UGT8Q16880 541 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 KIAA1614Q5VZ46 1190 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 GLYATQ6IB77 296 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CCDC81Q6ZN84 652 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 MSANTD1Q6ZTZ1 278 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 GPR155Q7Z3F1 870 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TMEM132CQ8N3T6 1108 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 GALNT4Q8N4A0 578 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 OR2T12Q8NG77 320 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 OR52E1Q8NGJ3 308 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 OR10A6Q8NH74 314 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CDC26Q8NHZ8 85 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 LCN9Q8WX39 176 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 NSMCE2Q96MF7 247 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CCDC115Q96NT0 180 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 HAUS8Q9BT25 410 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 INPP5KQ9BT40 448 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 DDA1Q9BW61 102 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ASPSCR1Q9BZE9 553 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 REXO4Q9GZR2 422 aaKnown RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TRIT1Q9H3H1 467 aaKnown RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 FBXO8Q9NRD0 319 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 AGPAT4Q9NRZ5 378 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CNOT11Q9UKZ1 510 aaKnown RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TXNDC9O14530 226 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 GSNP06396 782 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ANXA4P09525 319 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 UMPSP11172 480 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 BMP2P12643 396 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CDH1P12830 882 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 COX7A2P14406 83 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ZNF26P17031 533 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ZNF28P17035 718 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 HOXB9P17482 250 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 PTPN6P29350 595 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CDKN2CP42773 168 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ASMTP46597 345 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 SRSF11Q05519 484 aaKnown RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TIPARPQ7Z3E1 657 aaKnown RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 PRSS42Q7Z5A4 293 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 OOSP2Q86WS3 158 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TBC1D21Q8IYX1 336 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 TRPV3Q8NET8 790 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 KLHL6Q8WZ60 621 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 NKD1Q969G9 470 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 AURKBQ96GD4 344 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 GBP5Q96PP8 586 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 CPPED1Q9BRF8 314 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ACAT2Q9BWD1 397 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 RAB33BQ9H082 229 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 KLHL25Q9H0H3 589 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 SRMSQ9H3Y6 488 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 DMRT3Q9NQL9 472 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 ANAPC2Q9UJX6 822 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 PILRAQ9UKJ1 303 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 AP3M1Q9Y2T2 418 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 HEBP2Q9Y5Z4 205 aa11.33□□□□□ -0.6
CLIP1-208ENST00000537004 FASNP49327 2511 aaKnown RBP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 CCDC88CQ9P219 2028 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 GSAPA4D1B5 854 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 MAGEA13PA6NCF6 341 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 K7ENP7 123 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 RFXANKO14593 260 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 TPST1O60507 370 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 TIAF1O95411 115 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 UBTFL6P0CB48 400 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 NELFEP18615 380 aaKnown RBP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 FASP25445 335 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 TIA1P31483 386 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 HSD17B2P37059 387 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 PEX19P40855 299 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 HSPA13P48723 471 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 RAB15P59190 212 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 CYP4F2P78329 520 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 VAC14Q08AM6 782 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 CYP2A13Q16696 494 aa11.32□□□□□ -0.6
CLIP1-208ENST00000537004 SOWAHCQ53LP3 525 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-208ENST00000537004 KLHL35Q6PF15 583 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms