RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CD1DP15813 335 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 KRTAP5-9P26371 169 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 FCGR2BP31994 310 aaPredicted RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 FCGR2CP31995 323 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 DUTP33316 252 aaKnown RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 ZFP36L2P47974 494 aaKnown RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 C17orf67Q0P5P2 114 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 AP1B1Q10567 949 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 COX10Q12887 443 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 GIT2Q14161 759 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 C3AR1Q16581 482 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 CCDC40Q4G0X9 1142 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 AARDQ4LEZ3 155 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 SPANXN4Q5MJ08 99 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 LCE3CQ5T5A8 94 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 PRAMEF8Q5VWM4 474 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 RTL6Q6ICC9 239 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 B3GLCTQ6Y288 498 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 ZNF730Q6ZMV8 503 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 IL17RELQ6ZVW7 336 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 MIER3Q7Z3K6 550 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 SLC25A42Q86VD7 318 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 TBC1D10CQ8IV04 446 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 OR4N5Q8IXE1 308 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 BATF2Q8N1L9 274 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 ABHD12Q8N2K0 398 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 ZNF713Q8N859 430 aaPredicted RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 SMPDL3AQ92484 453 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 PRCCQ92733 491 aaPredicted RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 HAS2Q92819 552 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 SLC35C1Q96A29 364 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 RBM18Q96H35 190 aaKnown RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 CABS1Q96KC9 395 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 LURAP1Q96LR2 239 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 ZNF597Q96LX8 424 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 PI4K2AQ9BTU6 479 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 OSBPL8Q9BZF1 889 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 PARLQ9H300 379 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 THAP9Q9H5L6 903 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 ZNF665Q9H7R5 613 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 MAGEF1Q9HAY2 307 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 HMG20BQ9P0W2 317 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 VPS54Q9P1Q0 977 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 ERVK-18Q9QC07 812 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 HOOK1Q9UJC3 728 aaKnown RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 SLC9A8Q9Y2E8 581 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 TDRKHQ9Y2W6 561 aaKnown RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 KNSTRNQ9Y448 316 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 IGLV3-10A0A075B6K4 115 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 IGLV4-3A0A075B6K6 122 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 A0A0A6YYC8 382 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 MTMR11A4FU01 709 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 I3L1I5 382 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 CHEK1O14757 476 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 TNFSF12O43508 249 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 FGF19O95750 216 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 CHRNGP07510 517 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 PPP2R1BP30154 601 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 NUMBP49757 651 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 CLCN4P51793 760 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 NDST2P52849 883 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 ADARP55265 1226 aaKnown RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 OR1D5P58170 312 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 SSTP61278 116 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 BTG1P62324 171 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 SRPXP78539 464 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 GABPAQ06546 454 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 ACTN3Q08043 901 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 NME3Q13232 169 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 BTG3Q14201 252 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 SPHARQ15513 63 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 STX1AQ16623 288 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 C15orf32Q32M92 178 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 CNPY1Q3B7I2 92 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 SLC39A12Q504Y0 691 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 CWC27Q6UX04 472 aaKnown RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 CYP4V2Q6ZWL3 525 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 PRSS42Q7Z5A4 293 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 ASPGQ86U10 573 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 TDHQ8IZJ6 230 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 NAT8LQ8N9F0 302 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 TRPV3Q8NET8 790 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 BEST4Q8NFU0 473 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 NEK11Q8NG66 645 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 OR6M1Q8NGM8 313 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 OR6F1Q8NGZ6 308 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 GOLGA5Q8TBA6 731 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 U2AF1L4Q8WU68 220 aaKnown RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 PCNPQ8WW12 178 aaKnown RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 PDLIM5Q96HC4 596 aaKnown RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 RPGRIP1Q96KN7 1286 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 CXorf58Q96LI9 332 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 RUFY1Q96T51 708 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 SPAG8Q99932 426 aaPredicted RBP2.26□□□□□ -2.05
CD44-238ENST00000534296 CCM2Q9BSQ5 444 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 TRPV6Q9H1D0 765 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 DCLRE1BQ9H816 532 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 PLEKHA3Q9HB20 300 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 HOMER3Q9NSC5 361 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms