RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 EXOC3L1Q86VI1 746 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 NUDT13Q86X67 352 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 GBP7Q8N8V2 638 aaPredicted RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 CHTF18Q8WVB6 975 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 SELENOMQ8WWX9 145 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 TANKQ92844 425 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 PGM2Q96G03 612 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 FAM111AQ96PZ2 611 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 KCNA7Q96RP8 456 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 HBEGFQ99075 208 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 GATA5Q9BWX5 397 aaPredicted RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 MFRPQ9BY79 579 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 ALOXE3Q9BYJ1 711 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 RNF32Q9H0A6 362 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 RPF2Q9H7B2 306 aaKnown RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 LYARQ9NX58 379 aaKnown RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 SENP1Q9P0U3 644 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 PHF11Q9UIL8 331 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 MID2Q9UJV3 735 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 ZNF223Q9UK11 482 aaPredicted RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 TIMM22Q9Y584 194 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 RELNP78509 3460 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 H3BQF6 201 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 MAN1A2O60476 641 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 TRIM13O60858 407 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 LDB3O75112 727 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 PRKRAO75569 313 aaKnown RBP12.12□□□□□ -0.47
VPS28-216ENST00000533806 ALDH3A1P30838 453 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 SERTAD2Q14140 314 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 ACER2Q5QJU3 275 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 TRIM46Q7Z4K8 759 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 CUZD1Q86UP6 607 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 LGI4Q8N135 537 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 KIF2BQ8N4N8 673 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 CATSPER1Q8NEC5 780 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 B3GNT7Q8NFL0 401 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 DNAJB14Q8TBM8 379 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 UCN3Q969E3 161 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 SMC6Q96SB8 1091 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 BARD1Q99728 777 aaKnown RBP12.12□□□□□ -0.47
VPS28-216ENST00000533806 TRMOQ9BU70 441 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 ACPTQ9BZG2 426 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 EPS8L2Q9H6S3 715 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 SSU72Q9NP77 194 aaKnown RBP12.12□□□□□ -0.47
VPS28-216ENST00000533806 MID1IP1Q9NPA3 183 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 ADAP2Q9NPF8 381 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 SIRT5Q9NXA8 310 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 TEX10Q9NXF1 929 aaPredicted RBP12.12□□□□□ -0.47
VPS28-216ENST00000533806 STMN3Q9NZ72 180 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 AHSPQ9NZD4 102 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 VPS29Q9UBQ0 182 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 SLC12A4Q9UP95 1085 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 CCL27Q9Y4X3 112 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 SPACA6W5XKT8 324 aa12.12□□□□□ -0.47
VPS28-216ENST00000533806 NBASA2RRP1 2371 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 MYOCOSA0A1B0GUC4 107 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 A8MUA0 341 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 A8MUI8 341 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 J3QKU1 62 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 PGRMC2O15173 223 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 RGS16O15492 202 aaPredicted RBP12.11□□□□□ -0.47
VPS28-216ENST00000533806 MYO1DO94832 1006 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 AIFM1O95831 613 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 DDAH2O95865 285 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 WDPCPO95876 746 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 KLK1P06870 262 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 TNFSF10P50591 281 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 MLLT10P55197 1068 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 RAE1P78406 368 aaKnown RBP12.11□□□□□ -0.47
VPS28-216ENST00000533806 FOXK1P85037 733 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 BIKQ13323 160 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 MPP2Q14168 576 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CFAP157Q5JU67 520 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CEP85LQ5SZL2 805 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 FCRLBQ6BAA4 426 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 GALNT18Q6P9A2 607 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CYP20A1Q6UW02 462 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 PAGE2Q7Z2X7 111 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CRLF3Q8IUI8 442 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 OR4N5Q8IXE1 308 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 C1orf52Q8N6N3 182 aaKnown RBP12.11□□□□□ -0.47
VPS28-216ENST00000533806 EFCAB3Q8N7B9 438 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CCDC63Q8NA47 563 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 MORN4Q8NDC4 146 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 C7orf57Q8NEG2 295 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 MIB2Q96AX9 1013 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 TM4SF18Q96CE8 201 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CNDP1Q96KN2 507 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 ZNF354BQ96LW1 612 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 MECRQ9BV79 373 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 KCNK13Q9HB14 408 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 PNO1Q9NRX1 252 aaKnown RBP12.11□□□□□ -0.47
VPS28-216ENST00000533806 NMRK1Q9NWW6 199 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 PLA2G3Q9NZ20 509 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 CES1P1Q9UKY3 287 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 PCDHGA10Q9Y5H3 936 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 ACTL7BQ9Y614 415 aa12.11□□□□□ -0.47
VPS28-216ENST00000533806 TMEM200CA6NKL6 621 aa12.1□□□□□ -0.47
VPS28-216ENST00000533806 NPIPB8E9PQR5 432 aa12.1□□□□□ -0.47
VPS28-216ENST00000533806 CDK2AP1O14519 115 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms