RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 UQCRC2P22695 453 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 WEE1P30291 646 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 SOX6P35712 828 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 NNMTP40261 264 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 RPS26P62854 115 aaKnown RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 ERAP2Q6P179 960 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 CEACAM20Q6UY09 585 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 CCDC190Q86UF4 302 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 GPR65Q8IYL9 337 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 NRSN1Q8IZ57 195 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 DTD2Q96FN9 168 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 SDHCQ99643 169 aaPredicted RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 ITM2CQ9NQX7 267 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 MKLN1Q9UL63 735 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 ICKQ9UPZ9 632 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 CFL2Q9Y281 166 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 NUP210Q8TEM1 1887 aaPredicted RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 KMOO15229 486 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 NDUFB5O43674 189 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 FKTNO75072 461 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 SEMA7AO75326 666 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 MOSPD3O75425 235 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 GPX5O75715 221 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 METAP1P53582 386 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 TIMM50Q3ZCQ8 353 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 TRIM60Q495X7 471 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 GDPD3Q7L5L3 318 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 VASH1Q7L8A9 365 aaPredicted RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 ZNF557Q8N988 423 aaPredicted RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 FAM46DQ8NEK8 389 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 CHAC2Q8WUX2 184 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 COQ10AQ96MF6 247 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 OPALINQ96PE5 141 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 SLC25A19Q9HC21 320 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 MOV10Q9HCE1 1003 aaKnown RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 SLAMF7Q9NQ25 335 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 C11orf16Q9NQ32 467 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 CCDC177Q9NQR7 707 aaPredicted RBP18.34■□□□□ 0.53
VPS28-213ENST00000530983 REV1Q9UBZ9 1251 aa18.34■□□□□ 0.53
VPS28-213ENST00000530983 SPINT1O43278 529 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 ENTPD6O75354 484 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 PIPP12273 146 aaPredicted RBP18.33■□□□□ 0.53
VPS28-213ENST00000530983 CASP3P42574 277 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 SPANXN2Q5MJ10 180 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 TRMT11Q7Z4G4 463 aaKnown RBP18.33■□□□□ 0.53
VPS28-213ENST00000530983 SLC30A8Q8IWU4 369 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 HORMAD2Q8N7B1 307 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 SLC38A5Q8WUX1 472 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 DEFB118Q96PH6 123 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 IL4I1Q96RQ9 567 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 NLNQ9BYT8 704 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 FZD3Q9NPG1 666 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 WNT6Q9Y6F9 365 aa18.33■□□□□ 0.53
VPS28-213ENST00000530983 ANKRD34BA5PLL1 514 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 CTDSP2O14595 271 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 RGS13O14921 159 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 DYRK3O43781 588 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 SNX4O95219 450 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 BCHEP06276 602 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 PPM1AP35813 382 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 FEN1P39748 380 aaKnown RBP18.33■□□□□ 0.52
VPS28-213ENST00000530983 SEC23BQ15437 767 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 TNFAIP8L2Q6P589 184 aaPredicted RBP18.33■□□□□ 0.52
VPS28-213ENST00000530983 CCBE1Q6UXH8 406 aaPredicted RBP18.33■□□□□ 0.52
VPS28-213ENST00000530983 TMIGD1Q6UXZ0 262 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 SLC9B2Q86UD5 537 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 ZNF547Q8IVP9 402 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 GPR32P1Q8NGA4 272 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 IL17FQ96PD4 163 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 TRNT1Q96Q11 434 aaKnown RBP18.33■□□□□ 0.52
VPS28-213ENST00000530983 KCNS3Q9BQ31 491 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 EHD3Q9NZN3 535 aa18.33■□□□□ 0.52
VPS28-213ENST00000530983 TBX6O95947 436 aaPredicted RBP18.32■□□□□ 0.52
VPS28-213ENST00000530983 ADAP00813 363 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 OPRD1P41143 372 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 SLC39A5Q6ZMH5 540 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 LRIG1Q96JA1 1093 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 TOX2Q96NM4 488 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 NUAK2Q9H093 628 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 NEK6Q9HC98 313 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 HHATLQ9HCP6 504 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 PAK6Q9NQU5 681 aaPredicted RBP18.32■□□□□ 0.52
VPS28-213ENST00000530983 LSM2Q9Y333 95 aaKnown RBP18.32■□□□□ 0.52
VPS28-213ENST00000530983 HCFC2Q9Y5Z7 792 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 PNMA8CA0A1B0GUJ8 204 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 TLR4O00206 839 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 KPNA3O00505 521 aaPredicted RBP18.32■□□□□ 0.52
VPS28-213ENST00000530983 IGFBP1P08833 259 aaPredicted RBP18.32■□□□□ 0.52
VPS28-213ENST00000530983 DMPKQ09013 629 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 SAXO2Q658L1 398 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 ADGRF3Q8IZF5 1079 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 C2orf73Q8N5S3 287 aaPredicted RBP18.32■□□□□ 0.52
VPS28-213ENST00000530983 HCAR2Q8TDS4 363 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 NEURL3Q96EH8 262 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 YME1L1Q96TA2 773 aa18.32■□□□□ 0.52
VPS28-213ENST00000530983 PLPP1O14494 284 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 SOX14O95416 240 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 CXCL14O95715 111 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 SCG5P05408 212 aa18.31■□□□□ 0.52
VPS28-213ENST00000530983 OSMP13725 252 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms