RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RHBDD1Q8TEB9 315 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 C10orf90Q96M02 699 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 ZNF583Q96ND8 569 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 PIF1Q9H611 641 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 KAT8Q9H7Z6 458 aaKnown RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 TPT1P8Q9HAU6 139 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 PRDM9Q9NQV7 894 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 ENAMQ9NRM1 1142 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 GIMAP4Q9NUV9 329 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 MUC3AQ02505 3323 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 WASHC1A8K0Z3 465 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 OR2B3O76000 313 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 LMNAP02545 664 aaKnown RBP19.86■□□□□ 0.77
VPS28-208ENST00000527797 MSL3P1P0C860 447 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 FOLR1P15328 257 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 CKMT2P17540 419 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 ERFP50548 548 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 MLC1Q15049 377 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 DHFR2Q86XF0 187 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 CA13Q8N1Q1 262 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 SUMF1Q8NBK3 374 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 BHLHE22Q8NFJ8 381 aaPredicted RBP19.86■□□□□ 0.77
VPS28-208ENST00000527797 ZFP28Q8NHY6 868 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 FAM120BQ96EK7 910 aaKnown RBP19.86■□□□□ 0.77
VPS28-208ENST00000527797 BBS4Q96RK4 519 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 MUC13Q9H3R2 512 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 SLAMF7Q9NQ25 335 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 CORO2BQ9UQ03 480 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 ENTPD4Q9Y227 616 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 GMEB1Q9Y692 573 aa19.86■□□□□ 0.77
VPS28-208ENST00000527797 A0A0A6YYC8 382 aaPredicted RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 I3L1I5 382 aaPredicted RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 RDH16O75452 317 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 GAB1Q13480 694 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 COL9A2Q14055 689 aaPredicted RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 SPIDRQ14159 915 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 SF3A2Q15428 464 aaKnown RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 FAM214AQ32MH5 1076 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 OR52E8Q6IFG1 317 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 ZNF551Q7Z340 670 aaPredicted RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 ARHGAP22Q7Z5H3 698 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 TNIP2Q8NFZ5 429 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 OR2T12Q8NG77 320 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 OR5T3Q8NGG3 340 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 ZFP90Q8TF47 636 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 GFM1Q96RP9 751 aaKnown RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 SLC35A5Q9BS91 424 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 RPF2Q9H7B2 306 aaKnown RBP19.85■□□□□ 0.77
VPS28-208ENST00000527797 FANCEQ9HB96 536 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 NEUROD4Q9HD90 331 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 EGFL7Q9UHF1 273 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 SERTAD3Q9UJW9 196 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 CLCA2Q9UQC9 943 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 PCDHB3Q9Y5E6 796 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 ZNF780BQ9Y6R6 833 aa19.85■□□□□ 0.77
VPS28-208ENST00000527797 MYO1GB0I1T2 1018 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 FOXS1O43638 330 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 MED26O95402 600 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 NSA2O95478 260 aaKnown RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 GPX2P18283 190 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 CSNK2A2P19784 350 aaPredicted RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 AVPR1BP47901 424 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 RAB38P57729 211 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 ABHD18Q0P651 414 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 SLC14A1Q13336 389 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 PTRH1Q86Y79 214 aaKnown RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 GPR135Q8IZ08 494 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 OR1L3Q8NH93 324 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 SLC26A7Q8TE54 656 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 LRGUKQ96M69 825 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 CSF3RQ99062 836 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 COL25A1Q9BXS0 654 aaPredicted RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 RASSF4Q9H2L5 321 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 CLK4Q9HAZ1 481 aaKnown RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 IGHV5-10-1A0A0J9YXX1 117 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 H3BMH7 237 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 CHST10O43529 356 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 FKBP6O75344 327 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 PSMG1O95456 288 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 UQCRC2P22695 453 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 SOAT1P35610 550 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 NCBP2P52298 156 aaKnown RBP eCLIP19.84■□□□□ 0.775e-6■■□□□ 11.5
VPS28-208ENST00000527797 OR4D2P58180 307 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 SIM1P81133 766 aaPredicted RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 SHC2P98077 582 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 HSPB3Q12988 150 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 AASDHQ4L235 1098 aaPredicted RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 TLDC1Q6P9B6 456 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 SAMD14Q8IZD0 417 aaPredicted RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 CNRIP1Q96F85 164 aaPredicted RBP19.84■□□□□ 0.77
VPS28-208ENST00000527797 AMDHD1Q96NU7 426 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 PRRX2Q99811 253 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 TRIM15Q9C019 465 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 GLIPR2Q9H4G4 154 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 DCLRE1BQ9H816 532 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 CUTCQ9NTM9 273 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 ACTR3BQ9P1U1 418 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 FTSJ1Q9UET6 329 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 USP22Q9UPT9 525 aa19.84■□□□□ 0.77
VPS28-208ENST00000527797 SNX8Q9Y5X2 465 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms