RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ADAMTS18Q8TE60 1221 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 MESP1Q9BRJ9 268 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 SIKE1Q9BRV8 207 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 CRB3Q9BUF7 120 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 TMEM121BQ9BXQ6 578 aaPredicted RBP12.91□□□□□ -0.34
CD44-224ENST00000526669 VN1R1Q9GZP7 353 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 ACTL8Q9H568 366 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 RPF2Q9H7B2 306 aaKnown RBP12.91□□□□□ -0.34
CD44-224ENST00000526669 GPN2Q9H9Y4 310 aaPredicted RBP12.91□□□□□ -0.34
CD44-224ENST00000526669 WDR41Q9HAD4 459 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 CLK4Q9HAZ1 481 aaKnown RBP12.91□□□□□ -0.34
CD44-224ENST00000526669 C14orf105Q9NVL8 296 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 AIG1Q9NVV5 245 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 MKL2Q9ULH7 1088 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 MRPS33Q9Y291 106 aaKnown RBP12.91□□□□□ -0.34
CD44-224ENST00000526669 PCDHA9Q9Y5H5 950 aa12.91□□□□□ -0.34
CD44-224ENST00000526669 ANKRD11Q6UB99 2663 aaPredicted RBP12.91□□□□□ -0.34
CD44-224ENST00000526669 PTPRQQ9UMZ3 2332 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 FREM2Q5SZK8 3169 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 A0A1W2PS29 197 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 VSTM2BA6NLU5 285 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 TGFBR3LH3BV60 316 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 TERTO14746 1132 aaKnown RBP12.9□□□□□ -0.34
CD44-224ENST00000526669 GUCY1B2O75343 617 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 RAB40ALP0C0E4 278 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 C8orf89P0DMQ9 161 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 NCF2P19878 526 aaPredicted RBP12.9□□□□□ -0.34
CD44-224ENST00000526669 MAOAP21397 527 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 TLX1P31314 330 aaPredicted RBP12.9□□□□□ -0.34
CD44-224ENST00000526669 FOLR3P41439 243 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 EMP2P54851 167 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 RHAGQ02094 409 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 SLC13A2Q13183 592 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 PRSS53Q2L4Q9 553 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 TUBB8Q3ZCM7 444 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 LANCL3Q6ZV70 420 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 ZNF248Q8NDW4 579 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 KIAA1143Q96AT1 154 aaPredicted RBP12.9□□□□□ -0.34
CD44-224ENST00000526669 EXOSC8Q96B26 276 aaKnown RBP12.9□□□□□ -0.34
CD44-224ENST00000526669 PTCHD1Q96NR3 888 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 DCBLD2Q96PD2 775 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 OR1F2PQ96R84 312 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 FAIM2Q9BWQ8 316 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 TGIF2Q9GZN2 237 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 SLC26A1Q9H2B4 701 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 NECTIN3Q9NQS3 549 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 MS4A12Q9NXJ0 267 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 ASIC5Q9NY37 505 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 C3orf18Q9UK00 162 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 TCFL5Q9UL49 500 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 EXO1Q9UQ84 846 aaKnown RBP12.9□□□□□ -0.34
CD44-224ENST00000526669 EML6Q6ZMW3 1958 aa12.9□□□□□ -0.34
CD44-224ENST00000526669 MAP1BP46821 2468 aaKnown RBP12.89□□□□□ -0.35
CD44-224ENST00000526669 C1orf226A1L170 272 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 A8MUA0 341 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 IDSB3KWA1 339 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 C21orf140B9A014 251 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 KLK10O43240 276 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 FGF17O60258 216 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 SNX3O60493 162 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 PRMT3O60678 531 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ERAL1O75616 437 aaKnown RBP12.89□□□□□ -0.35
CD44-224ENST00000526669 KLF7O75840 302 aaPredicted RBP12.89□□□□□ -0.35
CD44-224ENST00000526669 RECKO95980 971 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 UMODP07911 640 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ACPPP15309 386 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 JAK1P23458 1154 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 PTPN4P29074 926 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 OTX2P32243 289 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 PTGER1P34995 402 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ASMTP46597 345 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 UFM1P61960 85 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 FOLH1Q04609 750 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 EEF1A2Q05639 463 aaKnown RBP12.89□□□□□ -0.35
CD44-224ENST00000526669 IL10RAQ13651 578 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 RPS6KA2Q15349 733 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ZNF750Q32MQ0 723 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ZNF385BQ569K4 471 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 OR52E8Q6IFG1 317 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 UNQ6494/PRO21346Q6UXR6 183 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 TICAM1Q8IUC6 712 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ZNF595Q8IYB9 648 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 OR7A2PQ8NGA2 310 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 SNIP1Q8TAD8 396 aaKnown RBP12.89□□□□□ -0.35
CD44-224ENST00000526669 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.89□□□□□ -0.35
CD44-224ENST00000526669 DNAJB14Q8TBM8 379 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 DOK4Q8TEW6 326 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 KLHL29Q96CT2 875 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 CCT8L2Q96SF2 557 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 DPY30Q9C005 99 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 WDR54Q9H977 334 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 MIEF1Q9NQG6 463 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 PADI2Q9Y2J8 665 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 GPR45Q9Y5Y3 372 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 ZFHX4Q86UP3 3567 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 TNRC6AQ8NDV7 1962 aaKnown RBP12.89□□□□□ -0.35
CD44-224ENST00000526669 EXPH5Q8NEV8 1989 aa12.89□□□□□ -0.35
CD44-224ENST00000526669 CELSR3Q9NYQ7 3312 aa12.88□□□□□ -0.35
CD44-224ENST00000526669 CLDN4O14493 209 aa12.88□□□□□ -0.35
CD44-224ENST00000526669 SCAMP2O15127 329 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms