RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 HIGD2BQ4VC39 106 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 AGAP7PQ5VUJ5 663 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 REG3GQ6UW15 175 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 CLEC1AQ8NC01 280 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ZNRF1Q8ND25 227 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 TRPV3Q8NET8 790 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 GANCQ8TET4 914 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 PRCCQ92733 491 aaPredicted RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 ATP6V1E2Q96A05 226 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 FAM46BQ96A09 425 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ULK4Q96C45 1275 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 NUSAP1Q9BXS6 441 aaKnown RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 MMADHCQ9H3L0 296 aaPredicted RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 SPG21Q9NZD8 308 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 RARRES3Q9UL19 164 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ZNF346Q9UL40 294 aaKnown RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 OR1A2Q9Y585 309 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 TMEM129A0AVI4 362 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 BCLAF3A2AJT9 711 aaKnown RBP3.4□□□□□ -1.87
CD44-215ENST00000525241 PHF1O43189 567 aaPredicted RBP3.4□□□□□ -1.87
CD44-215ENST00000525241 CSO75390 466 aaKnown RBP3.4□□□□□ -1.87
CD44-215ENST00000525241 CSDE1O75534 798 aaKnown RBP3.4□□□□□ -1.87
CD44-215ENST00000525241 OR6A2O95222 327 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 UROSP10746 265 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 CTNNA1P35221 906 aaKnown RBP3.4□□□□□ -1.87
CD44-215ENST00000525241 SLC1A6P48664 564 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 SERPINH1P50454 418 aaKnown RBP3.4□□□□□ -1.87
CD44-215ENST00000525241 RCN2Q14257 317 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 MEF2DQ14814 521 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 CCL14Q16627 93 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 FUT11Q495W5 492 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 PRAMEF8Q5VWM4 474 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 EMBQ6PCB8 327 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 ZNF730Q6ZMV8 503 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 TMEM126BQ8IUX1 230 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 SLC39A11Q8N1S5 342 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 CCDC197Q8NCU1 140 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 OR4Q3Q8NH05 313 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 PTP4A1Q93096 173 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 PCED1BQ96HM7 432 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 GUCD1Q96NT3 240 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 MARCH7Q9H992 704 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 IL1RAPL2Q9NP60 686 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 ERVK-19Q9WJR5 959 aa3.4□□□□□ -1.87
CD44-215ENST00000525241 SMIM30A4D0T7 59 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 FMO6PO60774 539 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 CPNE6O95741 557 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 GSTA2P09210 222 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 NUDT17P0C025 328 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 GPX3P22352 226 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 ID1P41134 155 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 TNFSF10P50591 281 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 RPS6KA1Q15418 735 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 STXBP2Q15833 593 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 C15orf32Q32M92 178 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 CCDC184Q52MB2 194 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 SLC25A30Q5SVS4 291 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 LEMD1Q68G75 181 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
CD44-215ENST00000525241 IYDQ6PHW0 289 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 TMUB2Q71RG4 321 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 NUFIP2Q7Z417 695 aaKnown RBP3.39□□□□□ -1.87
CD44-215ENST00000525241 CEACAM19Q7Z692 300 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 C17orf64Q86WR6 236 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 TICAM2Q86XR7 235 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 WDR49Q8IV35 697 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 TMCO5AQ8N6Q1 288 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 LINC00612Q8N6U2 182 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 ZNF781Q8N8C0 355 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 RTL3Q8N8U3 475 aaKnown RBP3.39□□□□□ -1.87
CD44-215ENST00000525241 HAS2Q92819 552 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 CDHR1Q96JP9 859 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 ANKRD27Q96NW4 1050 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 RAB40CQ96S21 281 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 S1PR3Q99500 378 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 HSD17B14Q9BPX1 270 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 NTMT1Q9BV86 223 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 NAPBQ9H115 298 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 CXXC4Q9H2H0 198 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 LIME1Q9H400 295 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 MAGEF1Q9HAY2 307 aa3.39□□□□□ -1.87
CD44-215ENST00000525241 ARGLU1Q9NWB6 273 aaPredicted RBP3.39□□□□□ -1.87
CD44-215ENST00000525241 LRRD1A4D1F6 860 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 ZNF840PA6NDX5 716 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 TMCO5BA8MYB1 307 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 NEDD8-MDP1E9PL57 170 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 KIAA0513O60268 411 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 GPRIN2O60269 458 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 STBD1O95210 358 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 HPP00738 406 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 MT-ND1P03886 318 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 MELTFP08582 738 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 SBK2P0C263 348 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 GP9P14770 177 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 CPA3P15088 417 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 B4GALT1P15291 398 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 EZRP15311 586 aaKnown RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 CTNNB1P35222 781 aa3.38□□□□□ -1.87
CD44-215ENST00000525241 RPL27P61353 136 aaKnown RBP3.38□□□□□ -1.87
CD44-215ENST00000525241 LCP2Q13094 533 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms