RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 RNF123Q5XPI4 1314 aa-1.67□□□□□ -2.68
RNU6-539P-201ENST00000516665 IGHV3OR16-12A0A075B7B8 117 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 A0A0J9YXY3 114 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 PSMB11A5LHX3 300 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 LGALS16A8MUM7 142 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ARPC2O15144 300 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 HTATSF1O43719 755 aaKnown RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 PLEKP08567 350 aaPredicted RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 CD27P26842 260 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 EEF1DP29692 281 aaKnown RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 RPL9P32969 192 aaKnown RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 NSFP46459 744 aaKnown RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 TRAPPC10P48553 1259 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 NAGLUP54802 743 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 NTHL1P78549 312 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 PRKCDQ05655 676 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ZNF181Q2M3W8 571 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 CTXN3Q4LDR2 81 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ZRANB3Q5FWF4 1079 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 EOGTQ5NDL2 527 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 DCLRE1AQ6PJP8 1040 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 WDR74Q6RFH5 385 aaPredicted RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ABRAXAS1Q6UWZ7 409 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 GDPD3Q7L5L3 318 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 OR6Y1Q8NGX8 325 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 OR2AJ1Q8NGZ0 328 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 SYNPRQ8TBG9 265 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 TRPC4APQ8TEL6 797 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 GIMAP1Q8WWP7 306 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 KIF1BPQ96EK5 621 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 FUT8Q9BYC5 575 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 DPAGT1Q9H3H5 408 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 FNDC4Q9H6D8 234 aaPredicted RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 PTGES2Q9H7Z7 377 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 IL1RAPL2Q9NP60 686 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 GKN1Q9NS71 199 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ABCC13Q9NSE7 274 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 DPM3Q9P2X0 92 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 MLXQ9UH92 298 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 PRPF19Q9UMS4 504 aaKnown RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 CHKBQ9Y259 395 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 TMED3Q9Y3Q3 217 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ETV7Q9Y603 341 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 DYNC1LI1Q9Y6G9 523 aaKnown RBP-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 CDH10Q9Y6N8 788 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 FRMPD3Q5JV73 1810 aa-1.68□□□□□ -2.68
RNU6-539P-201ENST00000516665 ZNF462Q96JM2 2506 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 ZNF724A8MTY0 619 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 HEPACAM2A8MVW5 462 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 E7EQL1 145 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SPECC1L-ADORA2AF8WAN1 911 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 RFPL1O75677 317 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 MBD4O95243 580 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SLC2A10O95528 541 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SPARCP09486 303 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SMIM18P0DKX4 95 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 NR2F1P10589 423 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 TRIM21P19474 475 aaKnown RBP-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 UGT1A3P35503 534 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 UQCRFS1P47985 274 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 UCP2P55851 309 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 RPS11P62280 158 aaKnown RBP eCLIP-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 ELAVL3Q14576 367 aaKnown RBP-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 IHHQ14623 411 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 MELKQ14680 651 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SEPT14Q6ZU15 432 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 NPM2Q86SE8 214 aaKnown RBP-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 ZNF573Q86YE8 665 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 LGI2Q8N0V4 545 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SAMD12Q8N8I0 201 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 LRTM2Q8N967 370 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 TRPV3Q8NET8 790 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 METTL21AQ8WXB1 218 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 SEPT1Q8WYJ6 367 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 POMGNT1Q8WZA1 660 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 TBCBQ99426 244 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 ELAC2Q9BQ52 826 aaKnown RBP-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 TWSG1Q9GZX9 223 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 RACGAP1Q9H0H5 632 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 GDAP2Q9NXN4 497 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 MPP6Q9NZW5 540 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 PNMA2Q9UL42 364 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 RNF115Q9Y4L5 304 aa-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 TPRP12270 2363 aaKnown RBP-1.69□□□□□ -2.68
RNU6-539P-201ENST00000516665 GOLGA6L10A0A0M3HER8 536 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 NKX6-3A6NJ46 265 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 LGALS9O00182 355 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 OR7A17O14581 309 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 NUPL2O15504 423 aaKnown RBP-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 PIP5K1CO60331 668 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 DNTTP04053 509 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 CCDC159P0C7I6 412 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 TCP1P17987 556 aaKnown RBP-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 IDSP22304 550 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 VCPP55072 806 aaKnown RBP-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 MAT1AQ00266 395 aaKnown RBP-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 TRAP1Q12931 704 aaKnown RBP-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 MYO9BQ13459 2157 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 TMEM225Q6GV28 225 aa-1.7□□□□□ -2.68
RNU6-539P-201ENST00000516665 Q6ZVQ6 151 aa-1.7□□□□□ -2.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms