RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 OR52J3Q8NH60 311 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 C9orf43Q8TAL5 461 aaPredicted RBP14.12□□□□□ -0.15
NUP54-217ENST00000514987 DNASE1L2Q92874 299 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 SLC38A4Q969I6 547 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 CRELD1Q96HD1 420 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 ALPK1Q96QP1 1244 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 INSM2Q96T92 566 aaPredicted RBP14.12□□□□□ -0.15
NUP54-217ENST00000514987 FBRSQ9HAH7 460 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 LHX9Q9NQ69 397 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 MBNL1Q9NR56 388 aaKnown RBP14.12□□□□□ -0.15
NUP54-217ENST00000514987 TMEM184CQ9NVA4 438 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 FAIMQ9NVQ4 179 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 LMCD1Q9NZU5 365 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 CFAP20Q9Y6A4 193 aaKnown RBP14.12□□□□□ -0.15
NUP54-217ENST00000514987 ALPK3Q96L96 1907 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 MYO7AQ13402 2215 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 A0A0A6YYD5 115 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 FEZF1A0PJY2 475 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 RTCAO00442 366 aaKnown RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 MFN2O95140 757 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 ZBTB11O95625 1053 aaPredicted RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 ADAP00813 363 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 VIPP01282 170 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 ACP5P13686 325 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 PPP2R1BP30154 601 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SSR2P43308 183 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 CCT3P49368 545 aaKnown RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 TUBA1BP68363 451 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 BHLHB9Q6PI77 547 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 TUBA1AQ71U36 451 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SLCO6A1Q86UG4 719 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 KRT73Q86Y46 540 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 MMP21Q8N119 569 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SLC15A4Q8N697 577 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 LINC01555Q8NAE3 123 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SRFBP1Q8NEF9 429 aaKnown RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 CREB3L4Q8TEY5 395 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 APOBEC4Q8WW27 367 aaKnown RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 UBE2FQ969M7 185 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 ELSPBP1Q96BH3 223 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 MOAP1Q96BY2 351 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 TMEM19Q96HH6 336 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SH3YL1Q96HL8 342 aaPredicted RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 COX4I2Q96KJ9 171 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 COL21A1Q96P44 957 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 TEFMQ96QE5 360 aaKnown RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 NIPSNAP1Q9BPW8 284 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SPATA5L1Q9BVQ7 753 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 BTBD1Q9H0C5 482 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SLAMF7Q9NQ25 335 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SIRT3Q9NTG7 399 aaPredicted RBP14.11□□□□□ -0.15
NUP54-217ENST00000514987 P2RX2Q9UBL9 471 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 AASSQ9UDR5 926 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 DUSP12Q9UNI6 340 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 MGAT4BQ9UQ53 548 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 SLC17A4Q9Y2C5 497 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 OR1A2Q9Y585 309 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 HEBP2Q9Y5Z4 205 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 TRPM6Q9BX84 2022 aa14.11□□□□□ -0.15
NUP54-217ENST00000514987 EFCAB10A6NFE3 127 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 PCDH17O14917 1159 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 TMPRSS11DO60235 418 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 BCHEP06276 602 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 CD36P16671 472 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 GABRB1P18505 474 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 NTSP30990 170 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 AHRP35869 848 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 UGT2B10P36537 528 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 TSFMP43897 325 aaKnown RBP14.1□□□□□ -0.15
NUP54-217ENST00000514987 IDH2P48735 452 aaKnown RBP14.1□□□□□ -0.15
NUP54-217ENST00000514987 OLR1P78380 273 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 HSPB3Q12988 150 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 NR1D2Q14995 579 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 ZIC1Q15915 447 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 ADPRMQ3LIE5 342 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 TMEM64Q6YI46 380 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 ADCK2Q7Z695 626 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 UBE3DQ7Z6J8 389 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 ADCK1Q86TW2 530 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 SLC44A2Q8IWA5 706 aaPredicted RBP14.1□□□□□ -0.15
NUP54-217ENST00000514987 LINC00471Q8N535 108 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 ZNF513Q8N8E2 541 aaPredicted RBP14.1□□□□□ -0.15
NUP54-217ENST00000514987 OR2A1Q8NGT9 310 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 SFXN5Q8TD22 340 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 EXOSC8Q96B26 276 aaKnown RBP14.1□□□□□ -0.15
NUP54-217ENST00000514987 DHRS1Q96LJ7 313 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 ZNF354BQ96LW1 612 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 OSGEPL1Q9H4B0 414 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 SEMA3GQ9NS98 782 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 RLIMQ9NVW2 624 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 CNOT2Q9NZN8 540 aaKnown RBP14.1□□□□□ -0.15
NUP54-217ENST00000514987 CKAP5Q14008 2032 aa14.1□□□□□ -0.15
NUP54-217ENST00000514987 A0A1W2PP55 124 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 LRIT2A6NDA9 550 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 ZAR1LA6NP61 321 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 FAAHO00519 579 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 PAK4O96013 591 aaPredicted RBP14.09□□□□□ -0.15
NUP54-217ENST00000514987 PSMB5P28074 263 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 KCNJ5P48544 419 aa14.09□□□□□ -0.15
NUP54-217ENST00000514987 CRISP1P54107 249 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms