RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CNIH4Q9P003 139 aa19.48■□□□□ 0.71
SQSTM1-210ENST00000506042 SLC17A6Q9P2U8 582 aa19.48■□□□□ 0.71
SQSTM1-210ENST00000506042 POLQO75417 2590 aa19.48■□□□□ 0.71
SQSTM1-210ENST00000506042 MED13LQ71F56 2210 aa19.48■□□□□ 0.71
SQSTM1-210ENST00000506042 CCDC168Q8NDH2 2452 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 ATP6AP2A0A1C7CYW4 349 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 ATP6AP2O75787 350 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 GLSO94925 669 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 STMN1P16949 149 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 CPN2P22792 545 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 GGT5P36269 586 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 GDF5P43026 501 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 SSR2P43308 183 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 RPL21P46778 160 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 TAS2R39P59534 338 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 PDIA2Q13087 525 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 EMC4Q5J8M3 183 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 SLC35F6Q8N357 371 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 NUBPLQ8TB37 319 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 RMND5BQ96G75 393 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 SCYL1Q96KG9 808 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 FOXC2Q99958 501 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 PHF11Q9UIL8 331 aa19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 FOXD3Q9UJU5 478 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-210ENST00000506042 C4orf51C9J302 202 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 DVL2O14641 736 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 DNASE1P24855 282 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 SERPINB3P29508 390 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 DNAJA1P31689 397 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 BUD31P41223 144 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 KIR2DL3P43628 341 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 RAP1GDS1P52306 607 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 TBCCQ15814 346 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 ZNF750Q32MQ0 723 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 TBCELQ5QJ74 424 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 RIPPLY2Q5TAB7 128 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 FBXW10Q5XX13 1052 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 ARSKQ6UWY0 536 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 LRRC70Q7Z2Q7 622 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 WDR53Q7Z5U6 358 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 ANKMY2Q8IV38 441 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 IGDCC3Q8IVU1 814 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 FBXO36Q8NEA4 188 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 PTPMT1Q8WUK0 201 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 WDR34Q96EX3 536 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 CMTM7Q96FZ5 175 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 LIN28AQ9H9Z2 209 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 WDR41Q9HAD4 459 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 MTRF1LQ9UGC7 380 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 RNF112Q9ULX5 631 aa19.46■□□□□ 0.71
SQSTM1-210ENST00000506042 IQANK1A0A1B0GTG1 560 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 G3V3Y1 287 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 PRKNO60260 465 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 CCNT2O60583 730 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 CCDC166P0CW27 439 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 GLI4P10075 376 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 PAFAH1B1P43034 410 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 MSH2P43246 934 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 HNRNPFP52597 415 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 RPP38P78345 283 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 DOC2AQ14183 400 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 MED27Q6P2C8 311 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 ACOT4Q8N9L9 421 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 TANKQ92844 425 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 ATG4BQ9Y4P1 393 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 HRH3Q9Y5N1 445 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 ADGRG4Q8IZF6 3080 aa19.45■□□□□ 0.7
SQSTM1-210ENST00000506042 DCHS2Q6V1P9 2916 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 CCDC188H7C350 402 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 TP53I11O14683 189 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 LDB3O75112 727 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 HIST1H1TP22492 207 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 GCKP35557 465 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 STT3AP46977 705 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 HSPA7P48741 367 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 DNASE1L1P49184 302 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 TMED10P49755 219 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 CHIT1Q13231 466 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 ZNF460Q14592 562 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 C6orf163Q5TEZ5 329 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 C16orf47Q6ZP98 133 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 PM20D2Q8IYS1 436 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 TAGAPQ8N103 731 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 TMEM52Q8NDY8 209 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 F2RL3Q96RI0 385 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 CSF3RQ99062 836 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 AICDAQ9GZX7 198 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 ZFP64Q9NPA5 681 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 PRDM7Q9NQW5 492 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 IKZF3Q9UKT9 509 aa19.44■□□□□ 0.7
SQSTM1-210ENST00000506042 INTS1Q8N201 2190 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 CTAGE15A4D2H0 777 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 PINLYPA6NC86 204 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 TMEM200CA6NKL6 621 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 TGFBR3LH3BV60 316 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 OR10H2O60403 315 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 PCNAP12004 261 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 ATP5A1P25705 553 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 ARFIP1P53367 373 aa19.43■□□□□ 0.7
SQSTM1-210ENST00000506042 PGGT1BP53609 377 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms