RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 LSM1O15116 133 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 HDAC3O15379 428 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 TMPRSS11DO60235 418 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 PCDH7O60245 1069 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 SEC22BO75396 215 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 ATP6AP2O75787 350 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 AGFG2O95081 481 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 BMP10O95393 424 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 JUNP05412 331 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 ZGLP1P0C6A0 271 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 FAM58BPP0C7Q3 252 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 IL10P22301 178 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 F8A1P23610 371 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 PRPH2P23942 346 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 PTPN4P29074 926 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 TPP2P29144 1249 aaPredicted RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 TIA1P31483 386 aaKnown RBP eCLIP9.45□□□□□ -0.9
NUP54-203ENST00000504173 FOLR3P41439 243 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 HK2P52789 917 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 MAPK12P53778 367 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 LIM2P55344 173 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 RAB38P57729 211 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 RPS18P62269 152 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 RPL38P63173 70 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 SRSF6Q13247 344 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 GALNTL6Q49A17 601 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 MINDY4Q4G0A6 757 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 ATP6AP1LQ52LC2 224 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 VWA2Q5GFL6 755 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 XKR7Q5GH72 579 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 CCNYL2Q5T2Q4 361 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 MFSD4BQ5TF39 518 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 SHISA6Q6ZSJ9 500 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 Q6ZSR9 355 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 GPR180Q86V85 440 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 ATCAYQ86WG3 371 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 WDR75Q8IWA0 830 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 CHTF18Q8WVB6 975 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 TBC1D20Q96BZ9 403 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 TUBGCP3Q96CW5 907 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 METTL2AQ96IZ6 378 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 PPP3R2Q96LZ3 170 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 C3orf30Q96M34 536 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 OR1F2PQ96R84 312 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 MAPKAP1Q9BPZ7 522 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 EBPLQ9BY08 206 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 SLC26A1Q9H2B4 701 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 ACTL8Q9H568 366 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 WDR54Q9H977 334 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 PHF11Q9UIL8 331 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 MCM8Q9UJA3 840 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 FBXW2Q9UKT8 454 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 DAPP1Q9UN19 280 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 PTRH2Q9Y3E5 179 aaKnown RBP9.45□□□□□ -0.9
NUP54-203ENST00000504173 CCL27Q9Y4X3 112 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 PCDHGA6Q9Y5G7 932 aa9.45□□□□□ -0.9
NUP54-203ENST00000504173 VSTM2BA6NLU5 285 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 B4GALT2O60909 372 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 CNOT3O75175 753 aaKnown RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 PEX11AO75192 247 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 VPS4BO75351 444 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 JRKO75564 520 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 CDC123O75794 336 aaPredicted RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 HEXBP07686 556 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 FHP07954 510 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 VIMP08670 466 aaKnown RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 CPN2P22792 545 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 JAK1P23458 1154 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 TLX1P31314 330 aaPredicted RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 BUD31P41223 144 aaPredicted RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 HNRNPH2P55795 449 aaKnown RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 FOXL2P58012 376 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 RAE1P78406 368 aaKnown RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 TNFRSF17Q02223 184 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 KLC1Q07866 573 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 ERV3-1Q14264 604 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 TUBB8Q3ZCM7 444 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 FAM69BQ5VUD6 431 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 MRM1Q6IN84 353 aaKnown RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 SHISA5Q8N114 240 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 FAM47BQ8NA70 645 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 OR2Y1Q8NGV0 311 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 CDC26Q8NHZ8 85 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 STARD8Q92502 1023 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 CSF3RQ99062 836 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 SPSB2Q99619 263 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 CRB3Q9BUF7 120 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 TGIF2Q9GZN2 237 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 CCDC134Q9H6E4 229 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 MEAF6Q9HAF1 191 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 SIRT5Q9NXA8 310 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 MS4A12Q9NXJ0 267 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 GIMAP2Q9UG22 337 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 TCFL5Q9UL49 500 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 MKL2Q9ULH7 1088 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 MRPS33Q9Y291 106 aaKnown RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 TMED5Q9Y3A6 229 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 POLR3HQ9Y535 204 aaPredicted RBP9.44□□□□□ -0.9
NUP54-203ENST00000504173 ASB4Q9Y574 426 aa9.44□□□□□ -0.9
NUP54-203ENST00000504173 MRPS18BQ9Y676 258 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms