RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 ZNF835Q9Y2P0 537 aa11.13□□□□□ -0.63
MED28-203ENST00000503945 CLDN16Q9Y5I7 305 aa11.13□□□□□ -0.63
MED28-203ENST00000503945 KLF2Q9Y5W3 355 aaPredicted RBP11.13□□□□□ -0.63
MED28-203ENST00000503945 FBN2P35556 2912 aa11.13□□□□□ -0.63
MED28-203ENST00000503945 GTF3C1Q12789 2109 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 HMX2A2RU54 273 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 A8MVJ9 347 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 C17orf105B2RV13 164 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 TGFBR3LH3BV60 316 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 RTCAO00442 366 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 PRRG2O14669 202 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 UGDHO60701 494 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 LDB3O75112 727 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 OR2J2O76002 312 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 TUBB4AP04350 444 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 RBP1P09455 135 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 COX7A2P14406 83 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 SSR2P43308 183 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 PIK3CGP48736 1102 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 RAP1GDS1P52306 607 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 ARFIP1P53367 373 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 IRF9Q00978 393 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 DDX39BQ13838 428 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 GTF2H2Q13888 395 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 SETDB1Q15047 1291 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 C3AR1Q16581 482 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 GLE1Q53GS7 698 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 GRHL2Q6ISB3 625 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 GTF2H2CQ6P1K8 395 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 METTL2BQ6P1Q9 378 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 PAOXQ6QHF9 649 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 IL20RBQ6UXL0 311 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 BNC2Q6ZN30 1099 aaPredicted RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 Q6ZPB1 254 aaPredicted RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 GPR180Q86V85 440 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 SIAH3Q8IW03 269 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 GPALPP1Q8IXQ4 340 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 CENPLQ8N0S6 344 aaPredicted RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 EID3Q8N140 333 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 CYP4Z2PQ8N1L4 340 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 MMGT1Q8N4V1 131 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 OR8K3Q8NH51 312 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 HUS1BQ8NHY5 278 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 ASB15Q8WXK1 588 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 C16orf45Q96MC5 204 aaPredicted RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 CSF3RQ99062 836 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 MTERF1Q99551 399 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 VPS11Q9H270 941 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 ACSS3Q9H6R3 686 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 RPF2Q9H7B2 306 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 LIN28AQ9H9Z2 209 aaKnown RBP11.12□□□□□ -0.63
MED28-203ENST00000503945 HPF1Q9NWY4 346 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 PSD3Q9NYI0 1048 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 TSC22D4Q9Y3Q8 395 aa11.12□□□□□ -0.63
MED28-203ENST00000503945 H0YIV9 168 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 WWP2O00308 870 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 TFECO14948 347 aaPredicted RBP11.11□□□□□ -0.63
MED28-203ENST00000503945 KLK8O60259 260 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 INHBAP08476 426 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 AGAP20933 346 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 HTR1EP28566 365 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 MEOX1P50221 254 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 SERPINB8P50452 374 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 SERPINB9P50453 376 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 RNF4P78317 190 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 PCBP2Q15366 365 aaKnown RBP eCLIP11.11□□□□□ -0.63
MED28-203ENST00000503945 CPSF6Q16630 551 aaKnown RBP eCLIP11.11□□□□□ -0.63
MED28-203ENST00000503945 RNFT1Q5M7Z0 435 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 LGSNQ5TDP6 509 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 ZNF793Q6ZN11 406 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 TAOK1Q7L7X3 1001 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 MDGA2Q7Z553 956 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 OR4N5Q8IXE1 308 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 C16orf52Q8NHV5 167 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 ANKRD9Q96BM1 317 aaPredicted RBP11.11□□□□□ -0.63
MED28-203ENST00000503945 SENP5Q96HI0 755 aaPredicted RBP11.11□□□□□ -0.63
MED28-203ENST00000503945 SGCZQ96LD1 299 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 GPR78Q96P69 363 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 NINJ2Q9NZG7 142 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 CPSF2Q9P2I0 782 aaKnown RBP11.11□□□□□ -0.63
MED28-203ENST00000503945 COPS7AQ9UBW8 275 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 PHF11Q9UIL8 331 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 TINAGQ9UJW2 476 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 ZNF223Q9UK11 482 aaPredicted RBP11.11□□□□□ -0.63
MED28-203ENST00000503945 TMCO1Q9UM00 188 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 MEMO1Q9Y316 297 aa11.11□□□□□ -0.63
MED28-203ENST00000503945 ANKRD17O75179 2603 aaKnown RBP11.11□□□□□ -0.63
MED28-203ENST00000503945 DCHS2Q6V1P9 2916 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 F8P00451 2351 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 TMEM200CA6NKL6 621 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 FOXE1O00358 373 aaPredicted RBP11.1□□□□□ -0.63
MED28-203ENST00000503945 PROM1O43490 865 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 PRKNO60260 465 aaPredicted RBP11.1□□□□□ -0.63
MED28-203ENST00000503945 KRT38O76015 456 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 SCELO95171 688 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 CLDN9O95484 217 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 ACSL3O95573 720 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 ALDOAP04075 364 aaKnown RBP11.1□□□□□ -0.63
MED28-203ENST00000503945 CTAGE8P0CG41 777 aa11.1□□□□□ -0.63
MED28-203ENST00000503945 COL6A2P12110 1019 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms