RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	PLPP1	O14494	284 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	CTNS	O60931	367 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	SIX3	O95343	332 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	ALDOA	P04075	364 aa	Known RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	S100B	P04271	92 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	IFNA16	P05015	189 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	LTA4H	P09960	611 aa	Known RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	ESRRA	P11474	423 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF10	P21506	573 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	HIST1H1T	P22492	207 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	CASQ1	P31415	396 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	KIR3DL1	P43629	444 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	SSR4	P51571	173 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	HNRNPH2	P55795	449 aa	Known RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	IGLV3-21	P80748	117 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	NAA30	Q147X3	362 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	EMC4	Q5J8M3	183 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	PAGE2B	Q5JRK9	111 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	MROH9	Q5TGP6	573 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	C18orf63	Q68DL7	685 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	GRHL2	Q6ISB3	625 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	MTFR2	Q6P444	385 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	IL20RB	Q6UXL0	311 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	TBC1D1	Q86TI0	1168 aa	Predicted RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	CD163	Q86VB7	1156 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF295-AS1	Q8N0V1	137 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	PLD6	Q8N2A8	252 aa	Known RBP	10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	C16orf52	Q8NHV5	167 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	HUS1B	Q8NHY5	278 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	STAG3L4	Q8TBR4	150 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	GPR78	Q96P69	363 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR8D2	Q9GZM6	311 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	LYRM4	Q9HD34	91 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	DMRT3	Q9NQL9	472 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF358	Q9NW07	568 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	NINJ2	Q9NZG7	142 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	MYOT	Q9UBF9	498 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	OPTC	Q9UBM4	332 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	VTI1B	Q9UEU0	232 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	C2CD3	Q4AC94	2353 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728		A0A1W2PS29	197 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	WASHC1	A8K0Z3	465 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	FAM166B	A8MTA8	275 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CDK2AP1	O14519	115 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CDC40	O60508	579 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZFAND5	O76080	213 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	PDE9A	O76083	593 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	MLYCD	O95822	493 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	TUBB4A	P04350	444 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	C2	P06681	752 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CCL3	P10147	92 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CRABP2	P29373	138 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	SSR2	P43308	183 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CASP6	P55212	293 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	RNF4	P78317	190 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	PCDH1	Q08174	1060 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	STX4	Q12846	297 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	ILF2	Q12905	390 aa	Known RBP	10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	LAPTM5	Q13571	262 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	SETDB1	Q15047	1291 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	PFKFB4	Q16877	469 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF750	Q32MQ0	723 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	KHDRBS2	Q5VWX1	349 aa	Known RBP	10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	MED27	Q6P2C8	311 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	ADGRD1	Q6QNK2	874 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	HSDL2	Q6YN16	418 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	C9orf40	Q8IXQ3	194 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	TMEM132C	Q8N3T6	1108 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	TEX9	Q8N6V9	391 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	POGLUT1	Q8NBL1	392 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR14A16	Q8NHC5	309 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	FAM57A	Q8TBR7	257 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF721	Q8TF20	911 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	UCN3	Q969E3	161 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	SCYL1	Q96KG9	808 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	MTERF1	Q99551	399 aa	Known RBP	10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CCDC77	Q9BR77	488 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	LRRC1	Q9BTT6	524 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	TBCD	Q9BTW9	1192 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	RAB17	Q9H0T7	212 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	NMRAL1	Q9HBL8	299 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	YARS2	Q9Y2Z4	477 aa	Known RBP	10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	ATG4B	Q9Y4P1	393 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728	CLCA3P	Q9Y6N3	262 aa		10.79	□□□□□ -0.68
VTI1A-208	ENST00000494728		A8MVJ9	347 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	KLRC4-KLRK1	H3BQV0	150 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	TMPRSS11D	O60235	418 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	KLK8	O60259	260 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	EED	O75530	441 aa	Known RBP	10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	GLS	O94925	669 aa	Predicted RBP	10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	CLDN14	O95500	239 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	NADK	O95544	446 aa	Predicted RBP	10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	IGKV3-11	P04433	115 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	TPO	P07202	933 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	CELA3A	P09093	270 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	AGA	P20933	346 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	CPN2	P22792	545 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	PTGS2	P35354	604 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	PIK3CG	P48736	1102 aa		10.78	□□□□□ -0.68
VTI1A-208	ENST00000494728	KRTAP10-9	P60411	292 aa		10.78	□□□□□ -0.68

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