RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZNF703Q9H7S9 590 aaPredicted RBP12.87□□□□□ -0.35
VARS-227ENST00000489979 PLEKHF2Q9H8W4 249 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 NEUROD4Q9HD90 331 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 SH2D2AQ9NP31 389 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 SLC17A6Q9P2U8 582 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 MTRF1LQ9UGC7 380 aaKnown RBP12.87□□□□□ -0.35
VARS-227ENST00000489979 DAPP1Q9UN19 280 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 PCDHGB3Q9Y5G1 929 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 TUBAL3A6NHL2 446 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 TBX6O95947 436 aaPredicted RBP12.86□□□□□ -0.35
VARS-227ENST00000489979 C1GALT1C1LP0DN25 315 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 PGAM1P18669 254 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 CEACAM8P31997 349 aaPredicted RBP12.86□□□□□ -0.35
VARS-227ENST00000489979 TRPC1P48995 793 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 MTTPP55157 894 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 KCNJ2P63252 427 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 RCN2Q14257 317 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 SLBPQ14493 270 aaKnown RBP eCLIP12.86□□□□□ -0.35
VARS-227ENST00000489979 EFTUD2Q15029 972 aaKnown RBP eCLIP12.86□□□□□ -0.354e-8■■■■■ 36.6
VARS-227ENST00000489979 PPP1R3AQ16821 1122 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 PRAMEF20Q5VT98 475 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 SLC22A10Q63ZE4 541 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 ADGRD1Q6QNK2 874 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 SLCO4C1Q6ZQN7 724 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 CNTN4Q8IWV2 1026 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 NAT8LQ8N9F0 302 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 OR2L5Q8NG80 312 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 NEIL3Q8TAT5 605 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 LINC01560Q8TB33 94 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 RUNDC3BQ96NL0 473 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 SERINC2Q96SA4 455 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 REXO4Q9GZR2 422 aaKnown RBP12.86□□□□□ -0.35
VARS-227ENST00000489979 ZFP64Q9NPA5 681 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 FOXD3Q9UJU5 478 aaPredicted RBP12.86□□□□□ -0.35
VARS-227ENST00000489979 BOKQ9UMX3 212 aaPredicted RBP12.86□□□□□ -0.35
VARS-227ENST00000489979 VWA7Q9Y334 891 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 KIAA1549Q9HCM3 1950 aa12.86□□□□□ -0.35
VARS-227ENST00000489979 NPEPPSL1A6NEC2 478 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 LRRC3CA6NJW4 275 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 CDC7O00311 574 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 LDB3O75112 727 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 CLEC3AO75596 197 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 WDR47O94967 919 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ETHE1O95571 254 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 EPPINO95925 133 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 HEXAP06865 529 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 GNAZP19086 355 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 GDF5P43026 501 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 DCAF7P61962 342 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ID2Q02363 134 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 SERTAD2Q14140 314 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 MPEG1Q2M385 716 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 C18orf21Q32NC0 220 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 ZNF791Q3KP31 576 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 ADPRMQ3LIE5 342 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ACSF3Q4G176 576 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 TRIM40Q6P9F5 258 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ABHD17CQ6PCB6 329 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 POMZP3Q6PJE2 187 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 MAATS1Q7Z4T9 603 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 PRIMA1Q86XR5 153 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 KRT78Q8N1N4 520 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 LRRC25Q8N386 305 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 LIX1Q8N485 282 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 PAQR8Q8TEZ7 354 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ZNF721Q8TF20 911 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 MAGOHBQ96A72 148 aaKnown RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 KIAA1191Q96A73 305 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 PDLIM5Q96HC4 596 aaKnown RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 MDFIQ99750 246 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 EGFL8Q99944 293 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ZNF395Q9H8N7 513 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 COPS7BQ9H9Q2 264 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 PROK2Q9HC23 129 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ACKR4Q9NPB9 350 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 COPS7AQ9UBW8 275 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 ZNF629Q9UEG4 869 aaPredicted RBP12.85□□□□□ -0.35
VARS-227ENST00000489979 RTTNQ86VV8 2226 aa12.85□□□□□ -0.35
VARS-227ENST00000489979 C15orf38-AP3S2A0A0A6YYH1 394 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 ANKDD1BA6NHY2 528 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 KIAA1324LA8MWY0 1029 aaPredicted RBP12.84□□□□□ -0.35
VARS-227ENST00000489979 AHRRA9YTQ3 701 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 BANF1O75531 89 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 CD53P19397 219 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 GSTM2P28161 218 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 TIMP3P35625 211 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 ZNF136P52737 540 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 NKX6-1P78426 367 aaPredicted RBP12.84□□□□□ -0.35
VARS-227ENST00000489979 PCBP2Q15366 365 aaKnown RBP eCLIP12.84□□□□□ -0.35
VARS-227ENST00000489979 SPANXN3Q5MJ09 141 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 FAM45BPQ6NSW5 357 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 LYPD8Q6UX82 237 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 VN1R5Q7Z5H4 357 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 GALNT7Q86SF2 657 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 KIF18BQ86Y91 864 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 NUBPLQ8TB37 319 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 SLC22A8Q8TCC7 542 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 FAM45AQ8TCE6 357 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 NUDT8Q8WV74 236 aa12.84□□□□□ -0.35
VARS-227ENST00000489979 SPACA9Q96E40 222 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms