RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TAF4O00268 1085 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 KIAA0513O60268 411 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 SEMA7AO75326 666 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 PRNPP04156 253 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 EPCAMP16422 314 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 CEBPBP17676 345 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 S100A5P33763 92 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 MAPK12P53778 367 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 HSPB3Q12988 150 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 SEC23BQ15437 767 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 DEPDC1Q5TB30 811 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 ZNF770Q6IQ21 691 aaPredicted RBP17.08■□□□□ 0.33
VIM-206ENST00000487938 FAM129CQ86XR2 697 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 CACTIN-AS1Q8N1I8 211 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 CYP4Z2PQ8N1L4 340 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 PLA2G15Q8NCC3 412 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 WDR36Q8NI36 951 aaKnown RBP17.08■□□□□ 0.33
VIM-206ENST00000487938 VANGL1Q8TAA9 524 aaPredicted RBP17.08■□□□□ 0.33
VIM-206ENST00000487938 UCN3Q969E3 161 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 UBE2E3Q969T4 207 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 TM4SF18Q96CE8 201 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 PDXPQ96GD0 296 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 TMEM19Q96HH6 336 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 MGLLQ99685 303 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 WFDC6Q9BQY6 131 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 NXF2Q9GZY0 626 aaKnown RBP17.08■□□□□ 0.33
VIM-206ENST00000487938 ZDHHC4Q9NPG8 344 aa17.08■□□□□ 0.33
VIM-206ENST00000487938 CUEDC1Q9NWM3 386 aaPredicted RBP17.08■□□□□ 0.33
VIM-206ENST00000487938 B4GALT2O60909 372 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 ADH5P11766 374 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 SPNP16150 400 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 SERPINB1P30740 379 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 TEKQ02763 1124 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 LRRC26Q2I0M4 334 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 FNDC3BQ53EP0 1204 aaKnown RBP17.08■□□□□ 0.32
VIM-206ENST00000487938 NCCRP1Q6ZVX7 275 aaPredicted RBP17.08■□□□□ 0.32
VIM-206ENST00000487938 C11orf96Q7Z7L8 435 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 HEATR4Q86WZ0 1026 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 LACC1Q8IV20 430 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 SFTPA1Q8IWL2 248 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 KRT78Q8N1N4 520 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 ANKRD53Q8N9V6 530 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 GPR32P1Q8NGA4 272 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 OR52A5Q9H2C5 316 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 SPATA7Q9P0W8 599 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 SLC23A2Q9UGH3 650 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 ICKQ9UPZ9 632 aa17.08■□□□□ 0.32
VIM-206ENST00000487938 EFCAB10A6NFE3 127 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ENTPD6O75354 484 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 FGF19O95750 216 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 DLGAP3O95886 979 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ALOX12P18054 663 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 DDCP20711 480 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 PSMB5P28074 263 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 MAGEA10P43363 369 aaPredicted RBP17.07■□□□□ 0.32
VIM-206ENST00000487938 LIMK1P53667 647 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 UGT2B15P54855 530 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ZNF181Q2M3W8 571 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 C9orf64Q5T6V5 341 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 IKBIPQ70UQ0 350 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 WDR53Q7Z5U6 358 aaPredicted RBP17.07■□□□□ 0.32
VIM-206ENST00000487938 RAD51AP1Q96B01 352 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 EXOSC8Q96B26 276 aaKnown RBP17.07■□□□□ 0.32
VIM-206ENST00000487938 ZFYVE19Q96K21 471 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 KCNS3Q9BQ31 491 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 DPEP2Q9H4A9 486 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 TM7SF3Q9NS93 570 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 AHSPQ9NZD4 102 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ANKMY1Q9P2S6 941 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 C17orf113A0A1B0GUU1 675 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ARHGAP33O14559 1287 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 CKMT1AP12532 417 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ADRB3P13945 408 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 OLR1P78380 273 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 SPDYE7PQ495Y7 208 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 SAXO2Q658L1 398 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 PLAG1Q6DJT9 500 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 TUBA3EQ6PEY2 450 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 LCTLQ6UWM7 567 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 DEF8Q6ZN54 512 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ZNF367Q7RTV3 350 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 C6orf120Q7Z4R8 191 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 FAM46DQ8NEK8 389 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 TFGQ92734 400 aaPredicted RBP17.07■□□□□ 0.32
VIM-206ENST00000487938 OTUB2Q96DC9 234 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 LINC00615Q96LM1 132 aaPredicted RBP17.07■□□□□ 0.32
VIM-206ENST00000487938 CDCA4Q9BXL8 241 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ZNF717Q9BY31 904 aaPredicted RBP17.07■□□□□ 0.32
VIM-206ENST00000487938 TMEM165Q9HC07 324 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 TMCC3Q9ULS5 477 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 KLK4Q9Y5K2 254 aa17.07■□□□□ 0.32
VIM-206ENST00000487938 ISPDA4D126 451 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 ANTXRLA6NF34 631 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 H7BY64 318 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 OR10H3O60404 316 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 MFN2O95140 757 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 ITGB7P26010 798 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 BSGP35613 385 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 OPRD1P41143 372 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 KHDRBS2Q5VWX1 349 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms