RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 CHEK1O14757 476 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 REC8O95072 547 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 CXCL14O95715 111 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 ANGPTL1O95841 491 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 PCP11498 1178 aaKnown RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 AOC1P19801 751 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 PKLRP30613 574 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 RPL9P32969 192 aaKnown RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 CNN1P51911 297 aaKnown RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 BACE1P56817 501 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 STARD6P59095 220 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 SSTP61278 116 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 HERV-K104P63124 156 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 RBBP4Q09028 425 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 HSPA14Q0VDF9 509 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 MEF2DQ14814 521 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 PDK1Q15118 436 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 SLC1A5Q15758 541 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 CARTPTQ16568 116 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 MPPE1Q53F39 396 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 TOR1AIP1Q5JTV8 583 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 DDI2Q5TDH0 399 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 C1orf189Q5VU69 101 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 PRAMEF7Q5VXH5 474 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 RTL6Q6ICC9 239 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 CAPN13Q6MZZ7 669 aaPredicted RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 CACUL1Q86Y37 369 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 METTL4Q8N3J2 472 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 HDDC3Q8N4P3 179 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 TMEM185AQ8NFB2 350 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 KIAA1524Q8TCG1 905 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 ANKRD9Q96BM1 317 aaPredicted RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 RPGRIP1Q96KN7 1286 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 CXorf58Q96LI9 332 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 NSMCE2Q96MF7 247 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 NSMCE3Q96MG7 304 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 OVOL2Q9BRP0 275 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 PINK1Q9BXM7 581 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 XPO4Q9C0E2 1151 aaKnown RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 WWP1Q9H0M0 922 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 C1orf21Q9H246 121 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 FNDC4Q9H6D8 234 aaPredicted RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 DDX28Q9NUL7 540 aaKnown RBP3.87□□□□□ -1.79
SMC4-218ENST00000486711 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.87□□□□□ -1.79
SMC4-218ENST00000486711 NDUFA13Q9P0J0 144 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 TMEM181Q9P2C4 612 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 CACNA1FO60840 1977 aa3.87□□□□□ -1.79
SMC4-218ENST00000486711 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 CFAP73A6NFT4 308 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 K7EQD1 137 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TFECO14948 347 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 ARHGEF9O43307 516 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TNFSF12O43508 249 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 SSX5O60225 188 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 KIAA0513O60268 411 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 ZNF821O75541 412 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 CALCAP01258 141 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TRIM49P0CI25 452 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TRIM49CP0CI26 452 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 GPX3P22352 226 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 SFNP31947 248 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 PITPNBP48739 271 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 FHITP49789 147 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TMEM50BP56557 158 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 MFGE8Q08431 387 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 ZNF177Q13360 481 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 KIAA0141Q14154 515 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 SMC1AQ14683 1233 aaKnown RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 OR1C1Q15619 314 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 PKN2Q16513 984 aaKnown RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 NKAIN2Q5VXU1 208 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 MFSD7Q6UXD7 560 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 C3P1Q6ZMU1 363 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 ZNF730Q6ZMV8 503 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TAF8Q7Z7C8 310 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 ADAMTSL2Q86TH1 951 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 LRRTM1Q86UE6 522 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 OR52B6Q8NGF0 335 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 OR4L1Q8NH43 312 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 GOLGA5Q8TBA6 731 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 TCP11Q8WWU5 503 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 CNRIP1Q96F85 164 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 SPAG8Q99932 426 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 FUNDC2Q9BWH2 189 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 UPF3AQ9H1J1 476 aaKnown RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 SLC26A1Q9H2B4 701 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 HOMER3Q9NSC5 361 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 FAM212BQ9NTI7 297 aaPredicted RBP3.86□□□□□ -1.79
SMC4-218ENST00000486711 ZDHHC18Q9NUE0 388 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 NDE1Q9NXR1 346 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 COPS7AQ9UBW8 275 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 FAM153AQ9UHL3 310 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 SMAD5-AS1Q9Y6J3 95 aa3.86□□□□□ -1.79
SMC4-218ENST00000486711 GLTPD2A6NH11 291 aa3.85□□□□□ -1.79
SMC4-218ENST00000486711 YJEFN3A6XGL0 299 aa3.85□□□□□ -1.79
SMC4-218ENST00000486711 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.85□□□□□ -1.79
SMC4-218ENST00000486711 ANHXE9PGG2 379 aa3.85□□□□□ -1.79
SMC4-218ENST00000486711 TLX2O43763 284 aaPredicted RBP3.85□□□□□ -1.79
SMC4-218ENST00000486711 OR6A2O95222 327 aa3.85□□□□□ -1.79
SMC4-218ENST00000486711 DUS4LO95620 317 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms