RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 METTL4Q8N3J2 472 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 ZADH2Q8N4Q0 377 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 RBMXL3Q8N7X1 1067 aaKnown RBP13.82□□□□□ -0.2
USP4-212ENST00000486549 PSMF1Q92530 271 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 TRIM4Q9C037 500 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 EPN3Q9H201 632 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 MS4A12Q9NXJ0 267 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 FIS1Q9Y3D6 152 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 ATG4BQ9Y4P1 393 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 CLDN16Q9Y5I7 305 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 GLOD5A6NK44 160 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 CTIFO43310 598 aaKnown RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 F10P00742 488 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 MYZAPP0CAP1 466 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 NR2F6P10588 404 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 HSD3B1P14060 373 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 HSD3B2P26439 372 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 TPP2P29144 1249 aaPredicted RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 SERPINB3P29508 390 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 TLX1P31314 330 aaPredicted RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 SOX11P35716 441 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 HMGCS1Q01581 520 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 ZNF33BQ06732 778 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 CSTF3Q12996 717 aaKnown RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 MFAP5Q13361 173 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 CCNYL2Q5T2Q4 361 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 MRM1Q6IN84 353 aaKnown RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 ZCCHC23Q6ZST2 131 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 ATCAYQ86WG3 371 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 KIF2BQ8N4N8 673 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 C1orf52Q8N6N3 182 aaKnown RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 M1APQ8TC57 530 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 CNDP1Q96KN2 507 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 ALOXE3Q9BYJ1 711 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 ACPTQ9BZG2 426 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 RPF2Q9H7B2 306 aaKnown RBP13.81□□□□□ -0.2
USP4-212ENST00000486549 TNFRSF12AQ9NP84 129 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 MMP25Q9NPA2 562 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 NMRK1Q9NWW6 199 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 VPS29Q9UBQ0 182 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 ASB4Q9Y574 426 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 CSAG2Q9Y5P2 127 aa13.81□□□□□ -0.2
USP4-212ENST00000486549 A0A1W2PR48 441 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 BLACEA4D250 179 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 PYCARD-AS1I3L0S3 204 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 PROM1O43490 865 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 FGF17O60258 216 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 AIFM1O95831 613 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 TNNI3P19429 210 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 MAPK12P53778 367 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 ARG2P78540 354 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 BTKQ06187 659 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 GALNT1Q10472 559 aaPredicted RBP13.8□□□□□ -0.2
USP4-212ENST00000486549 TBL3Q12788 808 aaKnown RBP13.8□□□□□ -0.2
USP4-212ENST00000486549 SLC6A19Q695T7 634 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 CLEC6AQ6EIG7 209 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 IGFL3Q6UXB1 125 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 CUZD1Q86UP6 607 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 SREK1Q8WXA9 508 aaKnown RBP13.8□□□□□ -0.2
USP4-212ENST00000486549 UCN3Q969E3 161 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 ANKRD9Q96BM1 317 aaPredicted RBP13.8□□□□□ -0.2
USP4-212ENST00000486549 PKNOX2Q96KN3 472 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 WDR41Q9HAD4 459 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 KCNK9Q9NPC2 374 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 ADAP2Q9NPF8 381 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 TEX10Q9NXF1 929 aaPredicted RBP13.8□□□□□ -0.2
USP4-212ENST00000486549 PLA2G3Q9NZ20 509 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 ADAM29Q9UKF5 820 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 CNTRLQ7Z7A1 2325 aa13.8□□□□□ -0.2
USP4-212ENST00000486549 WDR91A4D1P6 747 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 WASHC1A8K0Z3 465 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 H3BQF6 201 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 CHRNGP07510 517 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 BPGMP07738 259 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 ST13P50502 369 aaKnown RBP13.79□□□□□ -0.2
USP4-212ENST00000486549 TAS2R50P59544 299 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 FOXK1P85037 733 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 FOLH1Q04609 750 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 SERTAD2Q14140 314 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 ELAVL1Q15717 326 aaKnown RBP13.79□□□□□ -0.2
USP4-212ENST00000486549 IMPG1Q17R60 797 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 SPDYAQ5MJ70 313 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 ABHD17BQ5VST6 288 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 IGFL2Q6UWQ7 119 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 GBP7Q8N8V2 638 aaPredicted RBP13.79□□□□□ -0.2
USP4-212ENST00000486549 NFAM1Q8NET5 270 aaPredicted RBP13.79□□□□□ -0.2
USP4-212ENST00000486549 B3GNT7Q8NFL0 401 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 DNAJB14Q8TBM8 379 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 TANKQ92844 425 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 NCLNQ969V3 563 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 PNPLA2Q96AD5 504 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 PGM2Q96G03 612 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 APIPQ96GX9 242 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 LMF1Q96S06 567 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 ILKAPQ9H0C8 392 aaPredicted RBP13.79□□□□□ -0.2
USP4-212ENST00000486549 SLAMF7Q9NQ25 335 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 TEKT2Q9UIF3 430 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 B3GNT3Q9Y2A9 372 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 CLCA3PQ9Y6N3 262 aa13.79□□□□□ -0.2
USP4-212ENST00000486549 TRBV11-1A0A0K0K1C0 115 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms