RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 MTTPP55157 894 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 RNF4P78317 190 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 TBL3Q12788 808 aaKnown RBP12.04□□□□□ -0.48
HDAC6-227ENST00000485102 SERTAD2Q14140 314 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 CDKL4Q5MAI5 379 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 RIPPLY2Q5TAB7 128 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 STEAP4Q687X5 459 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 ZNF585AQ6P3V2 769 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 TRIM40Q6P9F5 258 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 VN1R5Q7Z5H4 357 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 ADAMTSL2Q86TH1 951 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 LIX1LQ8IVB5 337 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.04□□□□□ -0.48
HDAC6-227ENST00000485102 NRGNQ92686 78 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 WDR34Q96EX3 536 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 ALOXE3Q9BYJ1 711 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 LIN28AQ9H9Z2 209 aaKnown RBP12.04□□□□□ -0.48
HDAC6-227ENST00000485102 LYRM4Q9HD34 91 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 SH2D2AQ9NP31 389 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 PRDM7Q9NQW5 492 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 RASSF1Q9NS23 344 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 SACM1LQ9NTJ5 587 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 CCM2LQ9NUG4 571 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-227ENST00000485102 ZNF358Q9NW07 568 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 B4GALT7Q9UBV7 327 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 ST6GALNAC2Q9UJ37 374 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 LIPGQ9Y5X9 500 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 FREM3P0C091 2139 aa12.04□□□□□ -0.48
HDAC6-227ENST00000485102 FLNAP21333 2647 aaKnown RBP12.04□□□□□ -0.48
HDAC6-227ENST00000485102 A0A0G2JN53 185 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ANKDD1BA6NHY2 528 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 EIF3HO15372 352 aaKnown RBP eCLIP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ZNF354AO60765 605 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 DIAPH2O60879 1101 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 NADKO95544 446 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 IFNA16P05015 189 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 KLK2P20151 261 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 IVDP26440 423 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ADH7P40394 386 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 MAN2A2P49641 1150 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 PLA2G16P53816 162 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ARL4CP56559 192 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 C2orf54Q08AI8 447 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 BIKQ13323 160 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 E2F2Q14209 437 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 SLBPQ14493 270 aaKnown RBP eCLIP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 FBXL19-AS1Q494R0 122 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 PIGGQ5H8A4 983 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 C1orf185Q5T7R7 199 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 WLSQ5T9L3 541 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 TRMT10BQ6PF06 316 aaKnown RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 FAM47EQ6ZV65 393 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ZC3HC1Q86WB0 502 aaKnown RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 IFT20Q8IY31 132 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 SLC15A4Q8N697 577 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 EIF1ADQ8N9N8 165 aaKnown RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 FAM47BQ8NA70 645 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 SRFBP1Q8NEF9 429 aaKnown RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 NUBPLQ8TB37 319 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 MBD6Q96DN6 1003 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ALPK1Q96QP1 1244 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 EGFL8Q99944 293 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ROGDIQ9GZN7 287 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 POPDC3Q9HBV1 291 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ACKR4Q9NPB9 350 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 PPANQ9NQ55 473 aaKnown RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 DLL4Q9NR61 685 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 QPCTLQ9NXS2 382 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 SLC17A6Q9P2U8 582 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 MTRF1LQ9UGC7 380 aaKnown RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ACAD8Q9UKU7 415 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ZNF490Q9ULM2 529 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-227ENST00000485102 ATG4BQ9Y4P1 393 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 TEX264Q9Y6I9 313 aa12.03□□□□□ -0.48
HDAC6-227ENST00000485102 VPS13CQ709C8 3753 aa12.02□□□□□ -0.48
HDAC6-227ENST00000485102 BANF1O75531 89 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 WDR47O94967 919 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 SCELO95171 688 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 P04436 131 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 GDF5P43026 501 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 KCNC1P48547 511 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 TAS2R39P59534 338 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 IGLV3-21P80748 117 aaPredicted RBP12.02□□□□□ -0.49
HDAC6-227ENST00000485102 TGM3Q08188 693 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 STX4Q12846 297 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 TGFBIQ15582 683 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 ZNF791Q3KP31 576 aaPredicted RBP12.02□□□□□ -0.49
HDAC6-227ENST00000485102 ADGRD1Q6QNK2 874 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 DND1Q8IYX4 353 aaKnown RBP12.02□□□□□ -0.49
HDAC6-227ENST00000485102 TCAIMQ8N3R3 496 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 SLC2A12Q8TD20 617 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 PAQR8Q8TEZ7 354 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 ZNF721Q8TF20 911 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 KCNC2Q96PR1 638 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 CSF3RQ99062 836 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 MCMBPQ9BTE3 642 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 TBCDQ9BTW9 1192 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 POLDIP3Q9BY77 421 aaKnown RBP12.02□□□□□ -0.49
HDAC6-227ENST00000485102 OR8D2Q9GZM6 311 aa12.02□□□□□ -0.49
HDAC6-227ENST00000485102 TUBA8Q9NY65 449 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms