RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 A0A1W2PQM1 296 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 LRIT2A6NDA9 550 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 NOTOA8MTQ0 251 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 C9JVG2 144 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 H0YGG7 62 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SAP18O00422 153 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 HCRTR1O43613 425 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 PCDH7O60245 1069 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 EEDO75530 441 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 KLHL18O94889 574 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SCELO95171 688 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ZBTB11O95625 1053 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 LDOC1O95751 146 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 LMNAP02545 664 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 HPXP02790 462 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SERPIND1P05546 499 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ANKRD34CP0C6C1 535 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SLC35G6P0C7Q6 338 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 T-ENOLP0DO92 83 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 THRAP10827 490 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 PRPS2P11908 318 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 CD1EP15812 388 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 CKMT2P17540 419 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TGM1P22735 817 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 JAK1P23458 1154 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ACP1P24666 158 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TACR1P25103 407 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 IL12AP29459 219 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 BSGP35613 385 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 BUD31P41223 144 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 ZFP36L2P47974 494 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 RAP1GDS1P52306 607 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ARFIP1P53367 373 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 NME5P56597 212 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ARF3P61204 181 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 RGS1Q08116 209 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 BNIP1Q12981 228 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 RCAN2Q14206 197 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 PTGR1Q14914 329 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 CLPPQ16740 277 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 AGKQ53H12 422 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 LACTB2Q53H82 288 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 CACHD1Q5VU97 1274 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 USP53Q70EK8 1073 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TMPRSS9Q7Z410 1059 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 YTHDF3Q7Z739 585 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 NUDT13Q86X67 352 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SNX32Q86XE0 403 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 KMT5CQ86Y97 462 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 FUNDC1Q8IVP5 155 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 NAXDQ8IW45 347 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 OR4N4Q8N0Y3 316 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ARHGEF39Q8N4T4 335 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 CSNK1A1LQ8N752 337 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 OR2L5Q8NG80 312 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 OR4D9Q8NGE8 314 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 WDR48Q8TAF3 677 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SLC13A3Q8WWT9 602 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 KLHL6Q8WZ60 621 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 RERGQ96A58 199 aaPredicted RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 MS4A6EQ96DS6 147 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SLC41A2Q96JW4 573 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TEX37Q96LM6 180 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TEFMQ96QE5 360 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 DPYSL5Q9BPU6 564 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 MACROD1Q9BQ69 325 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 CENPKQ9BS16 269 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SORBS1Q9BX66 1292 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 REXO4Q9GZR2 422 aaKnown RBP6.31□□□□□ -1.4
USP48-208ENST00000479177 LRRN3Q9H3W5 708 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 KLHL31Q9H511 634 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 MYNNQ9NPC7 610 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TXLNGQ9NUQ3 528 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TMEM45AQ9NWC5 275 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 SOHLH2Q9NX45 425 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 TAGLN3Q9UI15 199 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 MCM8Q9UJA3 840 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 ADAM29Q9UKF5 820 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 KNTC1P50748 2209 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 AHCTF1Q8WYP5 2266 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 CEP295Q9C0D2 2601 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 FER1L5A0AVI2 2057 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 CROCCQ5TZA2 2017 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 SPTBN2O15020 2390 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 A0A0A6YYD5 115 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 A0A0G2JN53 185 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 FAM234BA2RU67 622 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 D6RAR5 112 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 RTCAO00442 366 aaKnown RBP6.3□□□□□ -1.4
USP48-208ENST00000479177 NR5A2O00482 541 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 NTN3O00634 580 aaPredicted RBP6.3□□□□□ -1.4
USP48-208ENST00000479177 TOX3O15405 576 aaPredicted RBP6.3□□□□□ -1.4
USP48-208ENST00000479177 ERI3O43414 337 aaKnown RBP6.3□□□□□ -1.4
USP48-208ENST00000479177 TMPRSS11DO60235 418 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 CBFA2T3O75081 653 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 SLC22A3O75751 556 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 RASSF9O75901 435 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 MYO1DO94832 1006 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 KIAA0754O94854 1291 aa6.3□□□□□ -1.4
USP48-208ENST00000479177 UNC5CO95185 931 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms