RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 C1orf189Q5VU69 101 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 ARHGEF16Q5VV41 709 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 SLC25A24Q6NUK1 477 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 SH2D5Q6ZV89 423 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 Q6ZVQ6 151 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 BNIPLQ7Z465 357 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 LACC1Q8IV20 430 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 DENND6BQ8NEG7 585 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 GPR148Q8TDV2 347 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 CHPT1Q8WUD6 406 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 NCLNQ969V3 563 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 TMEM45BQ96B21 275 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 CXorf58Q96LI9 332 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 FAM218AQ96MZ4 157 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 JPH2Q9BR39 696 aaPredicted RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 THUMPD2Q9BTF0 503 aaKnown RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 ATXN10Q9UBB4 475 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 ERRFI1Q9UJM3 462 aaPredicted RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 MGAT4BQ9UQ53 548 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 KIF3AQ9Y496 699 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 STK36Q9NRP7 1315 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 YJEFN3A6XGL0 299 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 TCP10L2B9ZVM9 353 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 SLCO1B7G3V0H7 640 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 PCDH7O60245 1069 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 LRCH4O75427 683 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 SCGB2A1O75556 95 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 TRMUO75648 421 aaKnown RBP4.47□□□□□ -1.69
UPF3B-203ENST00000478840 CEACAM4O75871 244 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 ANGPTL1O95841 491 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 PROS1P07225 676 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 PRSS1P07477 247 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 ZCCHC18P0CG32 403 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 GP9P14770 177 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 C4BPBP20851 252 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 IL4RP24394 825 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 FHITP49789 147 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 BACE1P56817 501 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 ELP6Q0PNE2 266 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 CDC42EP5Q6NZY7 148 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 TRIM65Q6PJ69 517 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 PPP1R42Q7Z4L9 355 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 APLFQ8IW19 511 aaPredicted RBP4.47□□□□□ -1.69
UPF3B-203ENST00000478840 DCLK2Q8N568 766 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 OR10V1Q8NGI7 309 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 ARHGAP45Q92619 1136 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 AZIN2Q96A70 460 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 RAB7BQ96AH8 199 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 CRACR2AQ9BSW2 395 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 FICDQ9BVA6 458 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 VAT1LQ9HCJ6 419 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 ERVK-18Q9QC07 812 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 C2CD2Q9Y426 696 aa4.47□□□□□ -1.69
UPF3B-203ENST00000478840 CUX2O14529 1486 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 FAM230AA0A1W2PPH8 454 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 SHISA7A6NL88 538 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 ANHXE9PGG2 379 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 BLOC1S5-TXNDC5H3BN57 136 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 SURF4O15260 269 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 LANCL1O43813 399 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 APBB3O95704 486 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 PRSS56P0CW18 603 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 GIFP27352 417 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 HLA-FP30511 346 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 PRDX2P32119 198 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 XGP55808 180 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 CDKL1Q00532 357 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 HSF2Q03933 536 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 RIGQ13278 110 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF718Q3SXZ3 478 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 LDLRAP1Q5SW96 308 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 LIPJQ5W064 366 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 RTL6Q6ICC9 239 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 SLC26A9Q7LBE3 791 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 ITIH5Q86UX2 942 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF573Q86YE8 665 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 WDR49Q8IV35 697 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 TBC1D21Q8IYX1 336 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 ADAD2Q8NCV1 583 aaKnown RBP4.46□□□□□ -1.7
UPF3B-203ENST00000478840 SELENOMQ8WWX9 145 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 PHYHIPQ92561 330 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF274Q96GC6 653 aaPredicted RBP4.46□□□□□ -1.7
UPF3B-203ENST00000478840 RBM18Q96H35 190 aaKnown RBP4.46□□□□□ -1.7
UPF3B-203ENST00000478840 RAB40CQ96S21 281 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 DCTN5Q9BTE1 182 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 FUCA2Q9BTY2 467 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 WRAP53Q9BUR4 548 aaKnown RBP4.46□□□□□ -1.7
UPF3B-203ENST00000478840 NACA2Q9H009 215 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 NT5C3AQ9H0P0 336 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 RIBC2Q9H4K1 309 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 FAM124BQ9H5Z6 455 aaPredicted RBP4.46□□□□□ -1.7
UPF3B-203ENST00000478840 EXTL2Q9UBQ6 330 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 LHX3Q9UBR4 397 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 TBK1Q9UHD2 729 aa4.46□□□□□ -1.7
UPF3B-203ENST00000478840 A0A087WW49 117 aa4.45□□□□□ -1.7
UPF3B-203ENST00000478840 A0A1W2PR80 420 aa4.45□□□□□ -1.7
UPF3B-203ENST00000478840 SH3PXD2BA1X283 911 aa4.45□□□□□ -1.7
UPF3B-203ENST00000478840 SIGLEC5O15389 551 aa4.45□□□□□ -1.7
UPF3B-203ENST00000478840 KRT86O43790 486 aa4.45□□□□□ -1.7
UPF3B-203ENST00000478840 VPS26AO75436 327 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms