RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ALOX12P18054 663 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 GNAZP19086 355 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 JAK1P23458 1154 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 STX2P32856 288 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 GP5P40197 560 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 EFNA3P52797 238 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 RHAGQ02094 409 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CLCQ05315 142 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CKAP4Q07065 602 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 USP10Q14694 798 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ABRAXAS2Q15018 415 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 RBBP5Q15291 538 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TSNQ15631 228 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 NSDHLQ15738 373 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 INAQ16352 499 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 EXT1Q16394 746 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 EIF2S3LQ2VIR3 472 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 BTBD16Q32M84 506 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 DEFB134Q4QY38 66 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ABHD17BQ5VST6 288 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 PLAG1Q6DJT9 500 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 RPUSD3Q6P087 351 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM180AQ6UWF9 173 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CYP2R1Q6VVX0 501 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 SYT10Q6XYQ8 523 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 C3orf62Q6ZUJ4 267 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 LANCL3Q6ZV70 420 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ANKRD37Q7Z713 158 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 KLHDC8AQ8IYD2 350 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TCAIMQ8N3R3 496 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ST6GALNAC3Q8NDV1 305 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CATSPER1Q8NEC5 780 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TRPV3Q8NET8 790 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TTLQ8NG68 377 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 OR1N1Q8NGS0 311 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 GRHL3Q8TE85 626 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 PSMF1Q92530 271 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 HAS2Q92819 552 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TBC1D20Q96BZ9 403 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 RHBDF1Q96CC6 855 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 MOCOSQ96EN8 888 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 PEX11GQ96HA9 241 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 IMMP1LQ96LU5 166 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 GPR22Q99680 433 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 RBBP8Q99708 897 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 SPNS1Q9H2V7 528 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CNOT10Q9H9A5 744 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 SMYD2Q9NRG4 433 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ST6GALNAC2Q9UJ37 374 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 NTNG1Q9Y2I2 539 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 MTO1Q9Y2Z2 717 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TSC22D4Q9Y3Q8 395 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 POLEQ07864 2286 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 SPTAN1Q13813 2472 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 USP9YO00507 2555 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 IGHV3-20A0A0C4DH32 117 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 OR2W5A6NFC9 320 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 NCF1BA6NI72 391 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 NCF1CA8MVU1 366 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 MAGEB17A8MXT2 336 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CHST10O43529 356 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 H2AFYO75367 372 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 WISP3O95389 354 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 WDPCPO95876 746 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 S100BP04271 92 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 FHP07954 510 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SERPINA6P08185 405 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CCDC166P0CW27 439 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 C1GALT1C1LP0DN25 315 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 NCF1P14598 390 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CALRP27797 417 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 GSTM2P28161 218 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 HPDP32754 393 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SPRP35270 261 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SLC6A12P48065 614 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 TNFSF10P50591 281 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 PLTPP55058 493 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 OR4D2P58180 307 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 GPX6P59796 221 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 RAB10P61026 200 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ATP6V0D1P61421 351 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 STXBP1P61764 594 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF33BQ06732 778 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ACTN3Q08043 901 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SLMAPQ14BN4 828 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 TGFBIQ15582 683 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ZKSCAN8Q15776 578 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SFT2D3Q587I9 215 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 TOR1AIP1Q5JTV8 583 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CDKL4Q5MAI5 379 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 GRTP1Q5TC63 336 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SULT1C3Q6IMI6 304 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 PAPD4Q6PIY7 484 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF572Q7Z3I7 529 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CCDC25Q86WR0 208 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 GPSM1Q86YR5 675 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 CTAGE3PQ8IX95 158 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 KRT78Q8N1N4 520 aa6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 C17orf53Q8N3J3 647 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-213ENST00000476903 SPATA6LQ8N4H0 392 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms