RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GRTP1Q5TC63 336 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TMEM211Q6ICI0 200 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ADGRD1Q6QNK2 874 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IL20RBQ6UXL0 311 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RGS9BPQ6ZS82 235 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CAPN12Q6ZSI9 719 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LRRC70Q7Z2Q7 622 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RPRMLQ8N4K4 120 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GOLM1Q8NBJ4 401 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SPATA4Q8NEY3 305 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR7G3Q8NG95 312 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 STAG3L4Q8TBR4 150 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CDKL2Q92772 493 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SCYL1Q96KG9 808 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SGCZQ96LD1 299 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ROGDIQ9GZN7 287 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TP63Q9H3D4 680 aaPredicted RBP11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MCCC2Q9HCC0 563 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SAYSD1Q9NPB0 183 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IGSF5Q9NSI5 407 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HPF1Q9NWY4 346 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CD274Q9NZQ7 290 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ARHGAP21Q5T5U3 1957 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 AKAP6Q13023 2319 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 WWP2O00308 870 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RTCAO00442 366 aaKnown RBP11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FAM155BO75949 473 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PDE9AO76083 593 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TPOP07202 933 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SPRP35270 261 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ARFIP1P53367 373 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IRF8Q02556 426 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TGM3Q08188 693 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 BIKQ13323 160 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 BMPR2Q13873 1038 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HIST2H2ACQ16777 129 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 KBTBD12Q3ZCT8 623 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GXYLT1Q4G148 440 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PIGGQ5H8A4 983 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HIST2H2AA3Q6FI13 130 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LYPD8Q6UX82 237 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MAATS1Q7Z4T9 603 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SNX31Q8N9S9 440 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 C7orf57Q8NEG2 295 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NUBPLQ8TB37 319 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SLC2A12Q8TD20 617 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CA5BP1Q8WTZ4 195 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ASB5Q8WWX0 329 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ASB15Q8WXK1 588 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 UBE2E3Q969T4 207 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SENP5Q96HI0 755 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF717Q9BY31 904 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TTTY12Q9BZ98 90 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 DEFB127Q9H1M4 99 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NPDC1Q9NQX5 325 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PYCARDQ9ULZ3 195 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ERVK-11Q9UQG0 969 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RNF6Q9Y252 685 aa11.34□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF469Q96JG9 3925 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HMX2A2RU54 273 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR14I1A6ND48 311 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 C17orf105B2RV13 164 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 K7EPI3 171 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FGF17O60258 216 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CCNT2O60583 730 aaKnown RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 KERAO60938 352 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NADKO95544 446 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TGFB1P01137 390 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 IFNA16P05015 189 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SERPINB1P30740 379 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CHRNB4P30926 498 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PIK3CBP42338 1070 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MSH2P43246 934 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 STT3AP46977 705 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PPIAP62937 165 aaKnown RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 STX4Q12846 297 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TRADDQ15628 312 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZNF791Q3KP31 576 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NDUFAF5Q5TEU4 345 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 KHDRBS2Q5VWX1 349 aaKnown RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RTL6Q6ICC9 239 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR4C11Q6IEV9 310 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MRM1Q6IN84 353 aaKnown RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MED27Q6P2C8 311 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DGAT2L6Q6ZPD8 337 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RTL4Q6ZR62 310 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CHSY3Q70JA7 882 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TRILQ7L0X0 811 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CMC1Q7Z7K0 106 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SLC22A16Q86VW1 577 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CENPLQ8N0S6 344 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR5L2Q8NGL0 311 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RHEBL1Q8TAI7 183 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FAM173AQ9BQD7 235 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR8D2Q9GZM6 311 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DPH5Q9H2P9 285 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ALG9Q9H6U8 611 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 COPS7BQ9H9Q2 264 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 IL1RL2Q9HB29 575 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NMRAL1Q9HBL8 299 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms