RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ITGA3P26006 1051 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PSMB6P28072 239 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CHI3L1P36222 383 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 STAT6P42226 847 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 MTNR1AP48039 350 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 KCNJ3P48549 501 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CDC34P49427 236 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 AGTR2P50052 363 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 EMP2P54851 167 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 TNNC1P63316 161 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CNTN2Q02246 1040 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 HYAL1Q12794 435 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PMS2P3Q13401 168 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 HEPACAMQ14CZ8 416 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 DLG2Q15700 870 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 EXOC3L2Q2M3D2 409 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 SGSM1Q2NKQ1 1148 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 P3H1Q32P28 736 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ALKBH6Q3KRA9 238 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ANXA2RQ3ZCQ2 193 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CCDC153Q494R4 210 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 MFSD14CQ5VZR4 134 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 RFWD3Q6PCD5 774 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 C17orf99Q6UX52 265 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 KIAA1324Q6UXG2 1013 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM26Q6ZUK4 368 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 GSTA5Q7RTV2 222 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PAGE2Q7Z2X7 111 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 GPR180Q86V85 440 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CYP4Z1Q86W10 505 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CCDC25Q86WR0 208 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CCDC50Q8IVM0 306 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 MLKLQ8NB16 471 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 DTX3LQ8TDB6 740 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 LPAR1Q92633 364 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 NSMAFQ92636 917 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 RAD54LQ92698 747 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 OSTF1Q92882 214 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 EMG1Q92979 244 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 SLC25A36Q96CQ1 311 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 OTUB2Q96DC9 234 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 LRR1Q96L50 414 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 TAAR6Q96RI8 345 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 NPAS2Q99743 824 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 RTP3Q9BQQ7 232 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM43Q9BTV4 400 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CHRDL1Q9BU40 450 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 FRMD8Q9BZ67 464 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PRRG3Q9BZD7 231 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 NMNAT2Q9BZQ4 307 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 DRC3Q9H069 523 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PLEKHA4Q9H4M7 779 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 METTL8Q9H825 291 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 MAGEF1Q9HAY2 307 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF160Q9HCG1 818 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CSNK1G1Q9HCP0 422 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 RANGRFQ9HD47 186 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 MRPS30Q9NP92 439 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ASAH2Q9NR71 780 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 OSER1Q9NX31 292 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 CLEC5AQ9NY25 188 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 AHSPQ9NZD4 102 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 RHCGQ9UBD6 479 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ADAM28Q9UKQ2 775 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 A4GNTQ9UNA3 340 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 FOXA2Q9Y261 457 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PKP3Q9Y446 797 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 INSL5Q9Y5Q6 135 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 EMSYQ7Z589 1322 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 A0A087WUV0 522 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 KIR2DS5A0A0G2JLQ3 304 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PLSCR5A0PG75 271 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 BCLAF3A2AJT9 711 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM247A6NEH6 219 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TUBAL3A6NHL2 446 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ARGFXA6NJG6 315 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ANKRD66B4E2M5 251 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 KIR2DS3K7RE56 304 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 CTDSPLO15194 276 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SEC14L5O43304 696 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 BUD23O43709 281 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 GLRA3O75311 464 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MT-ND1P03886 318 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MT-ND2P03891 347 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ICAM1P05362 532 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 CHRM4P08173 479 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SERPINA6P08185 405 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PNMA6AP0CW24 399 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MCF2P10911 925 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 LYL1P12980 280 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ARSAP15289 507 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MX1P20591 662 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 S100A1P23297 94 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PIK3R1P27986 724 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 HLA-FP30511 346 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 OXTRP30559 389 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms