RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ZNF227Q86WZ6 799 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 GPALPP1Q8IXQ4 340 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 CYP4Z2PQ8N1L4 340 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 PTPMT1Q8WUK0 201 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-207ENST00000467985 PAFAH2Q99487 392 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 OR51B5Q9H339 312 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 IPPKQ9H8X2 491 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 DMRT3Q9NQL9 472 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 PSD3Q9NYI0 1048 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 PHF11Q9UIL8 331 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 ZNF180Q9UJW8 692 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 ZNF223Q9UK11 482 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-207ENST00000467985 NPIPA5E9PKD4 350 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 SAP18O00422 153 aaKnown RBP17.76■□□□□ 0.43
COL7A1-207ENST00000467985 CCL21O00585 134 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 SH3BGRLO75368 114 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 COX7A2P14406 83 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 TNNI3P19429 210 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 ECHS1P30084 290 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 TLX1P31314 330 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-207ENST00000467985 SLAMF1Q13291 335 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 CUL3Q13618 768 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 UBAP2Q5T6F2 1119 aaKnown RBP17.76■□□□□ 0.43
COL7A1-207ENST00000467985 WDR93Q6P2C0 686 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 GOLGA7Q7Z5G4 137 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 SIAH3Q8IW03 269 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 SLC34A3Q8N130 599 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 ZCCHC7Q8N3Z6 543 aaKnown RBP17.76■□□□□ 0.43
COL7A1-207ENST00000467985 L3MBTL4Q8NA19 623 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 OR8K3Q8NH51 312 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.76■□□□□ 0.43
COL7A1-207ENST00000467985 MTERF1Q99551 399 aaKnown RBP17.76■□□□□ 0.43
COL7A1-207ENST00000467985 PARD6BQ9BYG5 372 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 MYOTQ9UBF9 498 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 NPIPA1Q9UND3 350 aa17.76■□□□□ 0.43
COL7A1-207ENST00000467985 MYO7BQ6PIF6 2116 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 A0A087WUV0 522 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 C17orf105B2RV13 164 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 FOXE1O00358 373 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 ASNA1O43681 348 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 DYRK3O43781 588 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 LDB3O75112 727 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 SMIM24O75264 130 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 CLDN9O95484 217 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 DCTP40126 519 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 SRSF11Q05519 484 aaKnown RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 CPSF6Q16630 551 aaKnown RBP eCLIP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 C10orf62Q5T681 223 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 RPTNQ6XPR3 784 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 BNC2Q6ZN30 1099 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 GPR180Q86V85 440 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 GHDCQ8N2G8 530 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 PTGR2Q8N8N7 351 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 TANKQ92844 425 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 OR8D2Q9GZM6 311 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 TSPAN10Q9H1Z9 355 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 RPF2Q9H7B2 306 aaKnown RBP17.75■□□□□ 0.43
COL7A1-207ENST00000467985 TIMMDC1Q9NPL8 285 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 COPS7AQ9UBW8 275 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 ERVK-11Q9UQG0 969 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 ZNF835Q9Y2P0 537 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 CROCCQ5TZA2 2017 aa17.75■□□□□ 0.43
COL7A1-207ENST00000467985 MYO9AB2RTY4 2548 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 LRRC14BA6NHZ5 514 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 STX16-NPEPL1H3BU86 382 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 PLPP1O14494 284 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 STX16O14662 325 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 SIX3O95343 332 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 COL8A1P27658 744 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 BUD31P41223 144 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 RPS13P62277 151 aaKnown RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 IGLV3-21P80748 117 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 LGSNQ5TDP6 509 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 Q6ZPB1 254 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 SPPL2CQ8IUH8 684 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 PLD6Q8N2A8 252 aaKnown RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 CPSF7Q8N684 471 aaKnown RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 MYRIPQ8NFW9 859 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 OR5L2Q8NGL0 311 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 ASB15Q8WXK1 588 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 ATP6V1E2Q96A05 226 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 ANKRD9Q96BM1 317 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 SCYL1Q96KG9 808 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 NOL11Q9H8H0 719 aaKnown RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 LYARQ9NX58 379 aaKnown RBP17.74■□□□□ 0.43
COL7A1-207ENST00000467985 PPT2Q9UMR5 302 aa17.74■□□□□ 0.43
COL7A1-207ENST00000467985 TMEM200CA6NKL6 621 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 A8MVJ9 347 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 POC1B-GALNT4F8VUJ3 575 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 PEX1O43933 1283 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 PRKNO60260 465 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-207ENST00000467985 OR2J2O76002 312 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 ARL1P40616 181 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-207ENST00000467985 STT3AP46977 705 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 MEOX1P50221 254 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 CCNG1P51959 295 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 TNFRSF17Q02223 184 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 ZNF787Q6DD87 383 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 SULF2Q8IWU5 870 aa17.73■□□□□ 0.43
COL7A1-207ENST00000467985 RNF175Q8N4F7 328 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms