RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 AOAHP28039 575 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 CCR7P32248 378 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MAPKAPK2P49137 400 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 LIM2P55344 173 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 CLDN20P56880 219 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ARF5P84085 180 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 FABP5Q01469 135 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 SRSF11Q05519 484 aaKnown RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ACSM2AQ08AH3 577 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 NFATC2Q13469 925 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PCBP1Q15365 356 aaKnown RBP eCLIP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF628Q5EBL2 1059 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ACSM2BQ68CK6 577 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 OLIG3Q7RTU3 272 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 NPAS3Q8IXF0 933 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 HJURPQ8NCD3 748 aaPredicted RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 AKAP1Q92667 903 aaKnown RBP eCLIP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 HHIPQ96QV1 700 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PIP5K1AQ99755 562 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 P2RY13Q9BPV8 354 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MND1Q9BWT6 205 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 HDHD2Q9H0R4 259 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 GPR52Q9Y2T5 361 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PCDHB1Q9Y5F3 818 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PRKYO43930 277 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 OR10H3O60404 316 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 CD160O95971 181 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 RECKO95980 971 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 CFDP00746 253 aaPredicted RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 HOXB6P17509 224 aaKnown RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ITGB7P26010 798 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MAPK1P28482 360 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 RPL9P32969 192 aaKnown RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PCGF2P35227 344 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MVDP53602 400 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ATP13A5Q4VNC0 1218 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 KIAA1324Q6UXG2 1013 aaKnown RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 RBFAQ8N0V3 343 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MMP21Q8N119 569 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ZBTB44Q8NCP5 570 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 BEST4Q8NFU0 473 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 WBP2Q969T9 261 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 TMED9Q9BVK6 235 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 RSPO3Q9BXY4 272 aaPredicted RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 SLC7A5P2Q9GIP4 190 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MCOLN1Q9GZU1 580 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 MS4A7Q9GZW8 240 aaPredicted RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PPP1R3EQ9H7J1 279 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 TBC1D17Q9HA65 648 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 SLC28A3Q9HAS3 691 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 C12orf10Q9HB07 376 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 COL4A4P53420 1690 aaPredicted RBP11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ALPK3Q96L96 1907 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 LOC105369274A0A096LPK9 316 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 HRO43593 1189 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 ARHGEF15O94989 841 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 GJB5O95377 273 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 ANXA4P09525 319 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CTRB1P17538 263 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CD9P21926 228 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SOAT1P35610 550 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 XCR1P46094 333 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CSNK1DP48730 415 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SRP9P49458 86 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 TAGLNQ01995 201 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 RGS1Q08116 209 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 C2orf80Q0P641 193 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 TSTA3Q13630 321 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 XKR6Q5GH73 641 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CTRB2Q6GPI1 263 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CHMP1BQ7LBR1 199 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 KCTD20Q7Z5Y7 419 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 OR4N4Q8N0Y3 316 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 GALNT6Q8NCL4 622 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 OR11H7Q8NGC8 314 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 HUS1BQ8NHY5 278 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 KCTD7Q96MP8 289 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SLC35A5Q9BS91 424 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 MRPL9Q9BYD2 267 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 RNF181Q9P0P0 153 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 NUP50Q9UKX7 468 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 EXO1Q9UQ84 846 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 XIRP2A4UGR9 3374 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 OR5K3A6NET4 321 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 FADS2P1A8MWK0 482 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 E7EQ34 232 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 M0QZQ0 153 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SCAMP2O15127 329 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SEMA7AO75326 666 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 RFPL3O75679 317 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 FCER2P06734 321 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CCT3P49368 545 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 EPHA5P54756 1037 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 IRF8Q02556 426 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CSTF1Q05048 431 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 BTN1A1Q13410 526 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 MFSD13AQ14CX5 517 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 TIGD3Q6B0B8 471 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 MZT2BQ6NZ67 158 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SERPINA13PQ6UXR4 307 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms