RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ZNF888P0CJ79 500 aaPredicted RBP16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 AHRP35869 848 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 HNF4AP41235 474 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 SCTRP47872 440 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 PCDH1Q08174 1060 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 ABRAXAS2Q15018 415 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 KANK2Q63ZY3 851 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 PLAG1Q6DJT9 500 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 AMER2Q8N7J2 671 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 TRPV3Q8NET8 790 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 OR52B6Q8NGF0 335 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 NT5CQ8TCD5 201 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 C10orf82Q8WW14 230 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 ATP6V1E2Q96A05 226 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 SHCBP1LQ9BZQ2 653 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 SPNS1Q9H2V7 528 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 TRPS1Q9UHF7 1281 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 OSGIN2Q9Y236 505 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 OR5H15A6NDH6 313 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 CRCPO75575 148 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 LDLRP01130 860 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 FHP07954 510 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 KITP10721 976 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 EPORP19235 508 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 JAK1P23458 1154 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 OLR1P78380 273 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 REEP5Q00765 189 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 INAQ16352 499 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 EXT1Q16394 746 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 SFT2D3Q587I9 215 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 HIST2H2BCQ6DN03 193 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 LETMD1Q6P1Q0 360 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 NXPE4Q6UWF7 544 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 CLYBLQ8N0X4 340 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 CCDC197Q8NCU1 140 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 PLPP5Q8NEB5 264 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 AGR3Q8TD06 166 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 TBC1D20Q96BZ9 403 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 ZNF354BQ96LW1 612 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 LPAR4Q99677 370 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 RNF32Q9H0A6 362 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 KCNK13Q9HB14 408 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 TNFRSF12AQ9NP84 129 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 ABI3Q9P2A4 366 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 TRAF6Q9Y4K3 522 aa16.91■□□□□ 0.3
SQSTM1-204ENST00000453046 PPP6CO00743 305 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 CHST10O43529 356 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 B4GALT2O60909 372 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 B3GALT4O96024 378 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 UROSP10746 265 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 GNAZP19086 355 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 ARL1P40616 181 aaPredicted RBP16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 OR4D2P58180 307 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 RAB8AP61006 207 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 RHAGQ02094 409 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 E2F2Q14209 437 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 PAPD4Q6PIY7 484 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 MAVSQ7Z434 540 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 ANKS4BQ8N8V4 417 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 ANKRD53Q8N9V6 530 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 OR4F6Q8NGB9 312 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 RFWD2Q8NHY2 731 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 M1APQ8TC57 530 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 TSLPQ969D9 159 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 ACTR8Q9H981 624 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 DCTN4Q9UJW0 460 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 ZNF225Q9UK10 706 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 ARL2BPQ9Y2Y0 163 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 SVILO95425 2214 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 NBPF19A0A087WUL8 3843 aa16.9■□□□□ 0.3
SQSTM1-204ENST00000453046 A0A0G2JND7 137 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 A0A1B0GTL3 188 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 TRPC5OSA6NMA1 111 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 MAGEB17A8MXT2 336 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 TMEM233B4DJY2 109 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 PSMD12O00232 456 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 ZNF195O14628 629 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 CLGNO14967 610 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 OR4F21O95013 312 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 RASAL1O95294 804 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 CLDN9O95484 217 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 CHEK2O96017 543 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 ARFIP2P53365 341 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 AQP5P55064 265 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 TBCCQ15814 346 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 ACER2Q5QJU3 275 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 FCRLBQ6BAA4 426 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 RNF165Q6ZSG1 346 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 MILR1Q7Z6M3 343 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 L3MBTL4Q8NA19 623 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 UTP15Q8TED0 518 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 THOC1Q96FV9 657 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 SEC16BQ96JE7 1060 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 PTCHD1Q96NR3 888 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 SLX1AQ9BQ83 275 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 TMEM120AQ9BXJ8 343 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 RHBGQ9H310 441 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 EHD1Q9H4M9 534 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 LANCL2Q9NS86 450 aa16.89■□□□□ 0.29
SQSTM1-204ENST00000453046 POLEQ07864 2286 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms