RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 CPN2P22792 545 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 CA7P43166 264 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 RPS13P62277 151 aaKnown RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 SLAMF1Q13291 335 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 BIKQ13323 160 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 DDX39BQ13838 428 aaKnown RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 MRM1Q6IN84 353 aaKnown RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 Q6ZPB1 254 aaPredicted RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 GPR180Q86V85 440 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 MYLK4Q86YV6 388 aaPredicted RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 PTGR2Q8N8N7 351 aaPredicted RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 POGLUT1Q8NBL1 392 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 OR8K3Q8NH51 312 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 TMEM125Q96AQ2 219 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 CENPKQ9BS16 269 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 NTMT1Q9BV86 223 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 SORBS1Q9BX66 1292 aaKnown RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 TRIM49D1C9J1S8 452 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 POC1B-GALNT4F8VUJ3 575 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 CLDN9O95484 217 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 ABHD2P08910 425 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 BSGP35613 385 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 RAP1GDS1P52306 607 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 CPSF6Q16630 551 aaKnown RBP eCLIP18.03■□□□□ 0.48
USP40-207ENST00000450940 RNFT1Q5M7Z0 435 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 HSDL2Q6YN16 418 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 GPALPP1Q8IXQ4 340 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 TMEM151AQ8N4L1 468 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 TMEM156Q8N614 296 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 CEP112Q8N8E3 955 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 TANKQ92844 425 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 NOL11Q9H8H0 719 aaKnown RBP18.03■□□□□ 0.48
USP40-207ENST00000450940 DDX31Q9H8H2 851 aaKnown RBP18.03■□□□□ 0.48
USP40-207ENST00000450940 MYOTQ9UBF9 498 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 XPR1Q9UBH6 696 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 PHF11Q9UIL8 331 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 PCTPQ9UKL6 214 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 NFU1Q9UMS0 254 aa18.03■□□□□ 0.48
USP40-207ENST00000450940 KLF13Q9Y2Y9 288 aaPredicted RBP18.03■□□□□ 0.48
USP40-207ENST00000450940 A0A0A6YYD5 115 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 MYOCOSA0A1B0GUC4 107 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 C17orf105B2RV13 164 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 NPIPA5E9PKD4 350 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 PROM1O43490 865 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 ASNA1O43681 348 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 FGF17O60258 216 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 SLC19A2O60779 497 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 SNRPAP09012 282 aaKnown RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 SBK3P0C264 359 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 COL8A1P27658 744 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 SSR4P51571 173 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 PHEXP78562 749 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 C10orf62Q5T681 223 aaPredicted RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 TIFABQ6ZNK6 161 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 TRMT10CQ7L0Y3 403 aaKnown RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 IFT20Q8IY31 132 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 CYP4Z2PQ8N1L4 340 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 CPSF7Q8N684 471 aaKnown RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 OR52B6Q8NGF0 335 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 PHF21BQ96EK2 531 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 MRPL57Q9BQC6 102 aaKnown RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 MRPL46Q9H2W6 279 aaKnown RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 RPF2Q9H7B2 306 aaKnown RBP18.02■□□□□ 0.48
USP40-207ENST00000450940 ZBTB26Q9HCK0 441 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 NPIPA1Q9UND3 350 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 ATG4BQ9Y4P1 393 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 ASB4Q9Y574 426 aa18.02■□□□□ 0.48
USP40-207ENST00000450940 CACNA1DQ01668 2161 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 EML6Q6ZMW3 1958 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 TRGV8A0A0C4DH27 118 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 KLRC4-KLRK1H3BQV0 150 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 SMIM24O75264 130 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 EEDO75530 441 aaKnown RBP18.01■□□□□ 0.47
USP40-207ENST00000450940 OR2J2O76002 312 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 ETHE1O95571 254 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 TNNI3P19429 210 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 GCAP28676 217 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 DCTP40126 519 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 STT3AP46977 705 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 NEK2P51955 445 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 HNRNPH2P55795 449 aaKnown RBP18.01■□□□□ 0.47
USP40-207ENST00000450940 TNFRSF17Q02223 184 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 ID2Q02363 134 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 TRAF3Q13114 568 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 MTFR2Q6P444 385 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 ADGRD1Q6QNK2 874 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 C16orf47Q6ZP98 133 aaPredicted RBP18.01■□□□□ 0.47
USP40-207ENST00000450940 MDGA2Q7Z553 956 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 SPPL2CQ8IUH8 684 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 SULF2Q8IWU5 870 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 CHERPQ8IWX8 916 aaKnown RBP18.01■□□□□ 0.47
USP40-207ENST00000450940 ZNF321PQ8N8H1 164 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 ZFP62Q8NB50 900 aaPredicted RBP18.01■□□□□ 0.47
USP40-207ENST00000450940 C16orf52Q8NHV5 167 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 UHMK1Q8TAS1 419 aaKnown RBP18.01■□□□□ 0.47
USP40-207ENST00000450940 SLC2A12Q8TD20 617 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 ZNF721Q8TF20 911 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 SCYL1Q96KG9 808 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 RASL10BQ96S79 203 aa18.01■□□□□ 0.47
USP40-207ENST00000450940 C1QTNF3Q9BXJ4 246 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms