RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 ZFR2Q9UPR6 939 aaKnown RBP18.35■□□□□ 0.53
HMGA1-205ENST00000447654 NEU3Q9UQ49 428 aa18.35■□□□□ 0.53
HMGA1-205ENST00000447654 THSD7BQ9C0I4 1608 aa18.35■□□□□ 0.53
HMGA1-205ENST00000447654 AIPO00170 330 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 GATCO43716 136 aaKnown RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 PTPN6P29350 595 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 MMP12P39900 470 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 AGTR2P50052 363 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 RPL38P63173 70 aaKnown RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 HTRA3P83110 453 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 PTGR1Q14914 329 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 GPR68Q15743 365 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 ARHGAP15Q53QZ3 475 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 SPIN4Q56A73 249 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 C10orf111Q8N326 155 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 NANOGP1Q8N7R0 232 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 BVESQ8NE79 360 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 CELF6Q96J87 481 aaKnown RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 SLC25A51Q9H1U9 297 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 COPZ2Q9P299 210 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 MBD2Q9UBB5 411 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 NPTNQ9Y639 398 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 ECDO95905 644 aaPredicted RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 PEPDP12955 493 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 CALCRP30988 508 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 RPL35P42766 123 aaKnown RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 HTR6P50406 440 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 RAB13P51153 203 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 AKR1D1P51857 326 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 AGFG1P52594 562 aaKnown RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 SSTP61278 116 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 PPIGQ13427 754 aaKnown RBP eCLIP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 EIF4EBP2Q13542 120 aaPredicted RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 DSG2Q14126 1118 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 CYP27C1Q4G0S4 372 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 MZT2AQ6P582 158 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 ACTR10Q9NZ32 417 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 PURGQ9UJV8 347 aaKnown RBP18.34■□□□□ 0.53
HMGA1-205ENST00000447654 POMT2Q9UKY4 750 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 NUBP2Q9Y5Y2 271 aa18.34■□□□□ 0.53
HMGA1-205ENST00000447654 H7C2Y5 167 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 J3KR12 359 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 TNFRSF11BO00300 401 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 STK25O00506 426 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 GNB5O14775 395 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 SELENOFO60613 162 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 MAFKO60675 156 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 HLA-DQB2P05538 268 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 ADRA2AP08913 450 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 MXD1Q05195 221 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 IL18Q14116 193 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 CLLU1OSQ5K130 101 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 FGD2Q7Z6J4 655 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 VTCN1Q7Z7D3 282 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 LDB1Q86U70 411 aaPredicted RBP18.33■□□□□ 0.52
HMGA1-205ENST00000447654 MIB1Q86YT6 1006 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 MCATQ8IVS2 390 aaKnown RBP18.33■□□□□ 0.52
HMGA1-205ENST00000447654 NUDT8Q8WV74 236 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 H2AFJQ9BTM1 129 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 KATNB1Q9BVA0 655 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 POLR2J2Q9GZM3 115 aaKnown RBP18.33■□□□□ 0.52
HMGA1-205ENST00000447654 BRD7Q9NPI1 651 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 MARK1Q9P0L2 795 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 NOD1Q9Y239 953 aa18.33■□□□□ 0.52
HMGA1-205ENST00000447654 A0A0B4J203 849 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 AKAP8O43823 692 aaKnown RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SLC19A2O60779 497 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SULT1A3P0DMM9 295 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SULT1A4P0DMN0 295 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 CPEP16870 476 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 CST5P28325 142 aaPredicted RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 CLCN7P51798 805 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SNRPGP62308 76 aaKnown RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 FGL1Q08830 312 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 MAP4K2Q12851 820 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 GPR176Q14439 515 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 PCBP2Q15366 365 aaKnown RBP eCLIP18.32■□□□□ 0.521e-16■■■□□ 16.2
HMGA1-205ENST00000447654 ZNF57Q68EA5 555 aaPredicted RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 FCRLBQ6BAA4 426 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 FIP1L1Q6UN15 594 aaKnown RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 C3P1Q6ZMU1 363 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 KIAA0907Q7Z7F0 614 aaPredicted RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SLC5A8Q8N695 610 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 OR6C4Q8NGE1 309 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SLC29A3Q9BZD2 475 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 SLC6A13Q9NSD5 602 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 RBM22Q9NW64 420 aaKnown RBP eCLIP18.32■□□□□ 0.522e-14■■■■□ 21.8
HMGA1-205ENST00000447654 OSER1Q9NX31 292 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 TNFRSF10BO14763 440 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 OTCP00480 354 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 IGLV3-25P01717 112 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 IFNA4P05014 189 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 CKBP12277 381 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 PRKAR1BP31321 381 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 S100A3P33764 101 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 ARSDP51689 593 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 DHODHQ02127 395 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 NRG1Q02297 640 aaPredicted RBP18.32■□□□□ 0.52
HMGA1-205ENST00000447654 DOC2BQ14184 412 aa18.32■□□□□ 0.52
HMGA1-205ENST00000447654 FAM26DQ5JW98 314 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms