RNA–Protein interactions for RNA: ENST00000442515.5

LINC00642-202, long intergenic non-protein coding RNA 642, humanhuman

TSL 3 BASIC

Gene LINC00642, Length 670 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-202ENST00000442515 CSF3RQ99062 836 aa12.78□□□□□ -0.36
LINC00642-202ENST00000442515 CAMK2AQ9UQM7 478 aa12.78□□□□□ -0.36
LINC00642-202ENST00000442515 MRPS33Q9Y291 106 aaKnown RBP12.78□□□□□ -0.36
LINC00642-202ENST00000442515 SVEP1Q4LDE5 3571 aa12.77□□□□□ -0.36
LINC00642-202ENST00000442515 SYNDIG1LA6NDD5 238 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 DEFB108AA8MXU0 73 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 C17orf105B2RV13 164 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 AP3B1O00203 1094 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 LRATO95237 230 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 SERPINA6P08185 405 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 TMIGD3P0DMS9 266 aaPredicted RBP12.77□□□□□ -0.37
LINC00642-202ENST00000442515 PAMP19021 973 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 SAT1P21673 171 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 BASP1P80723 227 aaKnown RBP12.77□□□□□ -0.37
LINC00642-202ENST00000442515 FOXF2Q12947 444 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 CSHL1Q14406 222 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 SF3B4Q15427 424 aaKnown RBP eCLIP12.77□□□□□ -0.37
LINC00642-202ENST00000442515 PIGGQ5H8A4 983 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 HEPHL1Q6MZM0 1159 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 LRRC8EQ6NSJ5 796 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 LYPD8Q6UX82 237 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 C20orf204Q6ZNR8 217 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 GAL3ST3Q96A11 431 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 SPACA9Q96E40 222 aaPredicted RBP12.77□□□□□ -0.37
LINC00642-202ENST00000442515 FAR2Q96K12 515 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 NPLQ9BXD5 320 aaPredicted RBP12.77□□□□□ -0.37
LINC00642-202ENST00000442515 VTI1BQ9UEU0 232 aa12.77□□□□□ -0.37
LINC00642-202ENST00000442515 CHD3Q12873 2000 aaKnown RBP12.77□□□□□ -0.37
LINC00642-202ENST00000442515 ARHGAP21Q5T5U3 1957 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 CTIFO43310 598 aaKnown RBP12.76□□□□□ -0.37
LINC00642-202ENST00000442515 SLC1A2P43004 574 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 TBL3Q12788 808 aaKnown RBP12.76□□□□□ -0.37
LINC00642-202ENST00000442515 SNX1Q13596 522 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 RBBP5Q15291 538 aaKnown RBP12.76□□□□□ -0.37
LINC00642-202ENST00000442515 DCST1Q5T197 706 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 DUPD1Q68J44 220 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 PEX26Q7Z412 305 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 TMPRSS11BQ86T26 416 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 PALM2Q8IXS6 379 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 FAM13CQ8NE31 585 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 OR10G3Q8NGC4 313 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 NUBPLQ8TB37 319 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 SLC22A8Q8TCC7 542 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 EEF1AKMT1Q8WVE0 214 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 C1orf54Q8WWF1 131 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 NTNG2Q96CW9 530 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 PIK3IP1Q96FE7 263 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 RUNDC3BQ96NL0 473 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 AIF1LQ9BQI0 150 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 DOHHQ9BU89 302 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 SFXN3Q9BWM7 321 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 ALOXE3Q9BYJ1 711 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 PELI2Q9HAT8 420 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 COPS7AQ9UBW8 275 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 NDRG3Q9UGV2 375 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 TRMT6Q9UJA5 497 aaKnown RBP12.76□□□□□ -0.37
LINC00642-202ENST00000442515 AMFRQ9UKV5 643 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 SLC6A5Q9Y345 797 aa12.76□□□□□ -0.37
LINC00642-202ENST00000442515 CHCHD2Q9Y6H1 151 aaPredicted RBP12.76□□□□□ -0.37
LINC00642-202ENST00000442515 CYR61O00622 381 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 ERI3O43414 337 aaKnown RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 B3GALT2O43825 422 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 TRAPPC6AO75865 159 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 ETHE1O95571 254 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 HIST1H2AGP0C0S8 130 aaPredicted RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 TNNI3P19429 210 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 HIST1H2ADP20671 130 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 HNRNPH1P31943 449 aaKnown RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 STXBP1P61764 594 aaKnown RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 STX4Q12846 297 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 CAPRIN1Q14444 709 aaKnown RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 VASNQ6EMK4 673 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 SYDE1Q6ZW31 735 aaPredicted RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 C9orf40Q8IXQ3 194 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 CCDC170Q8IYT3 715 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 MYO1HQ8N1T3 1032 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 MAPK1IP1LQ8NDC0 245 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 ZNF721Q8TF20 911 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 WDYHV1Q96HA8 205 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 HIST1H2AHQ96KK5 128 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 ZNF597Q96LX8 424 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 HIST1H2AJQ99878 128 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 H2AFJQ9BTM1 129 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 UGT2B28Q9BY64 529 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 FRMD8P1Q9BZ68 369 aaPredicted RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 CALHM2Q9HA72 323 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 KIAA1549Q9HCM3 1950 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 ARL15Q9NXU5 204 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 CNIH4Q9P003 139 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 ADGRE2Q9UHX3 823 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 CNOT11Q9UKZ1 510 aaKnown RBP12.75□□□□□ -0.37
LINC00642-202ENST00000442515 COMMD10Q9Y6G5 202 aa12.75□□□□□ -0.37
LINC00642-202ENST00000442515 BTNL10A8MVZ5 291 aa12.74□□□□□ -0.37
LINC00642-202ENST00000442515 MIF4GDA9UHW6 222 aaKnown RBP12.74□□□□□ -0.37
LINC00642-202ENST00000442515 HAX1O00165 279 aa12.74□□□□□ -0.37
LINC00642-202ENST00000442515 PHF1O43189 567 aaPredicted RBP12.74□□□□□ -0.37
LINC00642-202ENST00000442515 CTNSO60931 367 aa12.74□□□□□ -0.37
LINC00642-202ENST00000442515 TRIM3O75382 744 aaPredicted RBP12.74□□□□□ -0.37
LINC00642-202ENST00000442515 FTCDO95954 541 aa12.74□□□□□ -0.37
LINC00642-202ENST00000442515 C1QAP02745 245 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms