RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	OR6C1	Q96RD1	312 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	SORT1	Q99523	831 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	WDR77	Q9BQA1	342 aa	Predicted RBP	4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	TMEM79	Q9BSE2	394 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	TIMM29	Q9BSF4	260 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	TSSK1B	Q9BXA7	367 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	CAPS2	Q9BXY5	557 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	PITPNM3	Q9BZ71	974 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	IQCG	Q9H095	443 aa	Known RBP	4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	WWP1	Q9H0M0	922 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	RABEP2	Q9H5N1	569 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	STN1	Q9H668	368 aa	Known RBP	4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	RMI1	Q9H9A7	625 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	SLCO1B3	Q9NPD5	702 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	KLC4	Q9NSK0	619 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	OLAH	Q9NV23	265 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	OXSM	Q9NWU1	459 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	UTP6	Q9NYH9	597 aa	Known RBP	4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	TAAR2	Q9P1P5	351 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	CIDEB	Q9UHD4	219 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	MOSPD1	Q9UJG1	213 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	PDE10A	Q9Y233	779 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	OARD1	Q9Y530	152 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	ABCA1	O95477	2261 aa		4.54	□□□□□ -1.68
PTPN4-206	ENST00000441089	NCF1B	A6NI72	391 aa	Predicted RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	NCF1C	A8MVU1	366 aa	Predicted RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SUPT3H	B4E1H0	165 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PPP6C	O00743	305 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	UBFD1	O14562	309 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	KLF11	O14901	512 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PCDH17	O14917	1159 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	KPNA5	O15131	536 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SLC16A5	O15375	505 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SUSD5	O60279	629 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	EDF1	O60869	148 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SNN	O75324	88 aa	Predicted RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PSIP1	O75475	530 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SUPT3H	O75486	399 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	C1orf105	O95561	183 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	GUCA1C	O95843	209 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SERPINE1	P05121	402 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CHRNG	P07510	517 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	RPS17	P08708	135 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	FGF5	P12034	268 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	NCF1	P14598	390 aa	Predicted RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	EPOR	P19235	508 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	EEF1D	P29692	281 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	HSPA7	P48741	367 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CLCNKA	P51800	687 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	KPNA2	P52292	529 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	NAGLU	P54802	743 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CDH13	P55290	713 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	DNAJB13	P59910	316 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CDKL1	Q00532	357 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	OCRL	Q01968	901 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	RBPJ	Q06330	500 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CDC16	Q13042	620 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	KLF10	Q13118	480 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SP140	Q13342	867 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	RAPSN	Q13702	412 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SEPT7	Q16181	437 aa	Known RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PFKFB4	Q16877	469 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZNF678	Q5SXM1	525 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	LIPM	Q5VYY2	423 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	FAAH2	Q6GMR7	532 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	KLC3	Q6P597	504 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	GFRAL	Q6UXV0	394 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	FAM47E	Q6ZV65	393 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	UBE2R2	Q712K3	238 aa	Predicted RBP	4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ADAMTSL2	Q86TH1	951 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZNF227	Q86WZ6	799 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	GPSM1	Q86YR5	675 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	RAB43	Q86YS6	212 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089		Q8N1Y9	231 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CLEC1A	Q8NC01	280 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PDPR	Q8NCN5	879 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	OR5AR1	Q8NGP9	310 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CFAP61	Q8NHU2	1237 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PPP4R1	Q8TF05	950 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	DYDC1	Q8WWB3	177 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ASZ1	Q8WWH4	475 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PPP1R14A	Q96A00	147 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	SH3KBP1	Q96B97	665 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	RHBDF1	Q96CC6	855 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	L3HYPDH	Q96EM0	354 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	CHMP6	Q96FZ7	201 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	TSNARE1	Q96NA8	513 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	IL17F	Q96PD4	163 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PKP4	Q99569	1192 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZNF559	Q9BR84	538 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZNF747	Q9BV97	191 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	GSTO2	Q9H4Y5	243 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	MANSC1	Q9H8J5	431 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	PARVB	Q9HBI1	364 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZBTB26	Q9HCK0	441 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	FGFR1OP2	Q9NVK5	253 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	STMN3	Q9NZ72	180 aa		4.53	□□□□□ -1.68
PTPN4-206	ENST00000441089	NUDT4	Q9NZJ9	180 aa		4.53	□□□□□ -1.68

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