RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MECRQ9BV79 373 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 OR52A5Q9H2C5 316 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 C8orf33Q9H7E9 229 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 TMEM185BQ9H7F4 350 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CHRAC1Q9NRG0 131 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ASB6Q9NWX5 421 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 LAMP5Q9UJQ1 280 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 POMT1Q9Y6A1 747 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SPATA31A5Q5VU36 1347 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SPATA31A7Q8IWB4 1347 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 KCNJ5P48544 419 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CAMLGP49069 296 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 FKBP1BP68106 108 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ZNF101Q8IZC7 436 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 NXPE1Q8N323 547 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 PRMT8Q9NR22 394 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 RBMX2Q9Y388 322 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 U3KQV3 271 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 XRN1Q8IZH2 1706 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 SORDQ00796 357 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ENPP2Q13822 863 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC39A4Q6P5W5 647 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SPATC1LQ9H0A9 340 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SPTBN1Q01082 2364 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 HHLA1C9JL84 531 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 INSIG1O15503 277 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 RECQL4O94761 1208 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 APBB3O95704 486 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ADH1AP07327 375 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SYPP08247 313 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 METTL15P1P0C7V9 234 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TBPP20226 339 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 HSD11B1P28845 292 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 HLA-FP30511 346 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TM9SF4Q92544 642 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 COQ8BQ96D53 544 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 RSPRY1Q96DX4 576 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ZNF578Q96N58 590 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 NIFKQ9BYG3 293 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 GORASP2Q9H8Y8 452 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 C11orf16Q9NQ32 467 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 POLHQ9Y253 713 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TRBC2A0A5B9 178 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 NFKBIEO00221 500 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC1A7O00341 560 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 FKTNO75072 461 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 DFFBO76075 338 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CDH15P55291 814 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC7A9P82251 487 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TLE4Q04727 773 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 MYLK3Q32MK0 819 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SERPINA11Q86U17 422 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TMEM200AQ86VY9 491 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 NRROSQ86YC3 692 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 OR2T4Q8NH00 348 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC2A13Q96QE2 648 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 KCNS3Q9BQ31 491 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ARHGEF17Q96PE2 2063 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 CD3GP09693 182 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 AKR1A1P14550 325 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 IL12BP29460 328 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 TAS2R46P59540 309 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 KIAA0319Q5VV43 1072 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CMC1Q7Z7K0 106 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PMM1Q92871 262 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 MRPL45Q9BRJ2 306 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 POLMQ9NP87 494 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 C19orf25Q9UFG5 118 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 FBXL4Q9UKA2 621 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PCDHB10Q9UN67 800 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SHPRHQ149N8 1683 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ARL5CA6NH57 179 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SLC43A1O75387 559 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CTSEP14091 401 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 GGT1P19440 569 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 KITLGP21583 273 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CCKBRP32239 447 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SERPINF1P36955 418 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SMARCD3Q6STE5 483 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 FAM83HQ6ZRV2 1179 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 NDUFAF7Q7L592 441 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HSH2DQ96JZ2 352 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ELF4Q99607 663 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 CHRDL1Q9BU40 450 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HMX1Q9NP08 348 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 UNCXA6NJT0 531 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ZMPSTE24O75844 475 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SPP1P10451 314 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 IFNGR1P15260 489 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 LEPRP48357 1165 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 MSMO1Q15800 293 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ZFAND1Q8TCF1 268 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 RNF141Q8WVD5 230 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 TSGA13Q96PP4 275 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 B3GNT4Q9C0J1 378 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 TEX10Q9NXF1 929 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 A0A1W2PPM1 405 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SCDO00767 359 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 LTKP29376 864 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ALDH3B1P43353 468 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms